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Detailed information on CNT30591123


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SXS8|ERF3_TOBAC, E-value = 7e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3043670Musa acuminataPrunus dulcis24.1518.8184.12170forward

Expression of CNT30591123

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MGPGSRLRIGPRAASARLGNASPPPRRLPPVGAPLLPGPSASPAIGSSRTG*

>peptide 2 (69 aa)
MSPSSSTTEEEEPQSLWQSSSPLSTRGGGGGLICFLRIRGRMWIGAAAEGCRGPLKDSTVLLWLLDVGR*

>peptide 3 (40 aa)
RQGEKEITISFSFSLLSAPGSDIRGGEPYRGGRPPRAEGG*

Sequence

>CNT30591123
CGGCAAGGAGAGAAGGAAATAACCATTTCTTTTAGCTTTTCCCTTCTCTCAGCCCCGGGATCGGACATCAGAGGCGGAGAGCCGTATCGTGGAGGTCGTC
CTCCGAGGGCGGAAGGAGGTTGAGGTCGAAAGCCAGCGGCTGCCGGCACAACGACACGATGTCACCGTCGTCATCGACGACGGAGGAAGAGGAGCCGCAG
TCGCTGTGGCAGTCATCGTCGCCGTTGAGTACGCGCGGGGGTGGCGGGGGGTTGATCTGCTTCCTAAGGATCCGCGGCCGCATGTGGATCGGCGCCGCCG
CGGAGGGGTGCCGCGGGCCGCTGAAGGACTCCACGGTGCTGCTGTGGCTGCTGGACGTCGGCCGCTGAGGGGGAGGCGGCGGGTGGTGCTGATGCTGGTG
ATAGAAAGGGAAGTGGGCGGCGGACGGTAAGGAGGGGAAATTGGTCTTGGCCTTCGTGCCGCGAAGGGCTACGGCGGCGGCATCGTAGGCACGCGCAGCG
TCCTCGGCAGAATCGAAGGTGCCGAGCCAGACCCGGGTCTTCTTGCATGGGTCCCGGATCTCGGCTGCGAATCGGCCCCAGGGCCGCTTCCGCACGCCTC
GGAAACGCGTCCCCGCCGCCCCGCCGACTTCCGCCGGTGGGTGCGCCGCTTCTGCCCGGCCCTTCCGCATCGCCCGCGATCGGATCGTCGCGCACCGGGT
AGAT