« Back to Musa acuminata search


Detailed information on CNT30590385


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692625Musa acuminataOryza sativa13.0452.9185.59118forward
CNT30474096Musa acuminataSaccharum spontaneum14.9235.4391.85135forward
CNT30101508Musa acuminataOryza rufipogon16.1355.9483.56146forward
CNT3051215Musa acuminataCucumis sativus13.9220.7282.54126forward

Expression of CNT30590385

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MESSVMKAKQSNKAESMREANRVRRPDGCWGARTIHHRGRV*

>peptide 2 (43 aa)
MAASGRPGSASPSGLRRRIPRHRGCKPSPSEPSQSVYPFFLGSR

>peptide 3 (33 aa)
FNTSVGNGQWYELKLTLELTKWPEFISNQTFHI*

Sequence

>CNT30590385
TTCAATACCAGTGTAGGTAATGGACAGTGGTATGAACTCAAATTGACTTTGGAGTTGACAAAGTGGCCGGAGTTCATATCCAATCAGACTTTTCATATCT
AATTGGATGAACAACACCATCAGTTTAATGCAAGAAAGCCCCAATACACTGTAGAATTGTATGTCTGTGCCAACCATGAAATAATAGCTTCTTAGCATAA
GCATTATTTATTGGGCTTTGCGATCGCATCTCGTGACTTGTCAGATTTAGTACACATCCCAACTTTGAGGTGTTCCGTTGTCGCCTCAGACGAAGCGAAG
GACTCGATGGAGTCGTCCGTGATGAAGGCAAAGCAATCAAACAAGGCAGAGTCGATGAGAGAAGCGAATCGTGTCCGTCGGCCAGACGGATGTTGGGGAG
CGAGGACAATCCACCACCGAGGACGAGTCTGAGTCGCTCTCCACCCCGCCACAAGCCGGCCCTCTGAAATCCCTAACCGCCGCCGATTTCTTGGCAGCAG
CGATCAGGTCCGAGTGCGGGAAGGGGGACAGGGAGGACGGCCGCCGCAGCGCGAGATTTAGCGGCGAGGGACCGACGGCGGGCCGCCTCGAGGAGGTGGA
CGACTCGATGGTGCTGTTGCTGGGGCTGGCTGGCGCCGCCGTTCCGGCCGCTAATCCGGTGGCGCAGGCGGCGGCGTCGTAGGCGCGGGCGGCCTCCTCG
GCGGTGTCGAAGGTGCCGAGCCACACGCGGCACTTCTTGGCCGGGTCCCGGATCTCCGCCGCGTACCGCCCCCATGGCCGCTTCCGGACGCCCCGGTAGT
GCATCCCCTTCCGGTCTCCGCCGCCGCATCCCTCGCCACCGGGGTTGCAAGCCTTCGCCCTCGGAGCCATCGCAGAGTGTGTATCCCTTCTTCCTTGGAT
CGAGA