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Detailed information on CNT30590280


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30163276Musa acuminataPistacia vera22.9338.6483.19119forward
CNT30288667Musa acuminataTriticum aestivum24.0816.1986.4125forward
CNT30224613Musa acuminataHordeum vulgare20.6239.4885.98107forward
CNT30658930Musa acuminataTriticum dicoccoides22.7449.3785.59118forward
CNT3061285Musa acuminataArabidopsis lyrata24.0817.1983.2125forward
CNT30623024Musa acuminataDaucus carota17.7327.6382.6192forward
CNT3054194Musa acuminataAmborella trichopoda24.082.1984125forward
CNT30118191Musa acuminataCitrus clementina21.7710.8884.96113forward
CNT30603734Musa acuminataOryza punctata24.669.7585.94128forward

Expression of CNT30590280

Peptides detected in this lncRNA

>peptide 1 (62 aa)
PSTPLGISGREDCVNQDEGANNLSTQATTLGVTRGHNIRSTSIVLIEPLLKPFHHARTAYGT*

Sequence

>CNT30590280
CCCTAGCACTCCTCTTGGCATCAGTGGCAGAGAAGACTGTGTAAACCAGGATGAAGGTGCCAACAATCTCAGCACCCAAGCCACCACCCTTGGTGTAACC
AGGGGCCACAACATTCGCTCCACCTCCATTGTTCTCATAGAGCCCCTTCTTAAACCCTTTCACCACGCCCGCACCGCATATGGCACCTAGACACTGCATC
ACCATGTAGAACAGAGCCCTGGTCAGGGACAGCTTCCTGGCCAGGAGCAGCCCAAAGGTCACAGCCGGGTTGATGTGGCCATGAATTCTGCTATGCCAGC
CCTGTAGAAGGACCATGAGCTGAGCTCCGCTGGCTCAAACAGTGGAGCTGGTGGTGGCTCCTGGTAGTCCCTGTCCTGACTCTGGGCAGCTGTCCCTATT
GCCTGCCTCTCCGAGAACTTGTTTGCTCCCACCCTCACATCCTCCTCTCTCCCCTCCATCTTACCCCGAGGACACTCTTCTCCGGACTCTAGAACTATAT
GATGAGCACAGGAAAGAAA