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Detailed information on CNT3059025


BLAST search results

BLAST vs Swiss-Prot:
sp|P60314|RPOA_AMBTC, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Amborella trichopodaOryza sativa23.496.7785.87283forward
CNT30618863Amborella trichopodaSesamum indicum25.816.6284.89311forward
CNT30201891Amborella trichopodaPisum sativum11.1261.7582.09134forward
CNT3076567Amborella trichopodaBrassica juncea21.7472.1884.73262forward
CNT30228020Amborella trichopodaAnanas comosus58.2650.7687.04702forward
CNT3068454Amborella trichopodaLeersia perrieri20.6640.4987.15249forward
CNT30205112Amborella trichopodaHelianthus annuus12.5356.7782.12151forward
CNT30689031Amborella trichopodaTriticum urartu51.0411.0380.81615forward
CNT30585636Amborella trichopodaEchinochloa crusgalli20.664.3485.54249forward

Expression of CNT3059025

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLNFPKIFLTLTQKVLGDNSNWSIKIRFNAILFLLSPIPI*

Sequence

>CNT3059025
TCCAAAGCGGATCCTTCCTAGATACATCTATTTAAATTATTAAATTATGTTACGGATTCATTGCGAATAGCTCATGAAGTACAGTCCGTGTTGAAAATTC
AAAACGGATTTTCTTTCTTTTACAAAGAAAAGAAAGAATTACAATGGATTGAAAACTTATTCTTAGGTATTATATTAGGTAAATAAATTCATTGCAAAAC
GTTTCTTGAGAATGTCCAATACCCGTTTGACATCCTCTACACGAAAATGTTGAATTTTCCTAAGATCTTCTTGACTCTTACTCAAAAGGTCCTGGGAGAT
AATTCTAATTGGTCAATAAAAATACGTTTCAATGCAATTCTTTTTTTGCTTTCCCCTATCCCTATATAAGCCAACCCCTCATGAAAGGGGAAAAAAGGCG
CAGTAAATATGTTTTGATCGTCATCTAAATGGAGGTCCCGCTCCTCCGCATGTAGAAAAGGAATAAATAAATCGATCAAATTACGGGAAGCTTCGTAAAG
TGCCTCTTTAGGAGTTAAACTTCCATTTGTCCATATCTCTAGAAAAAGTATCTCTTGTTTTTCATTCTCATTTCCATAACATTGAATACTATAATTCGCA
TTTCGAACAGGCATAGATACAGCATCTATAGGATAACTTGCATCTTGGTTGGTGGTTCTCGTACGATATCCGCGATTTCTCTCGATTTCTAATCCAATAC
AAAAATTAATTGGTTCGGTGATACTAGCTATATGCTGTGTAGTATCAACTATTTTCACAGAAGGTGGTGAGATTATATCTTGAGCAGTTACATATTTAGG
ACCCCTAACACAGATAAATGCATCACGAGTCCCGTACAGATCGCTTCTAACTATAATTTCTTTCAAATTCATTAAAATTTCATGTACTGATTCCTCAATA
CCTACTATTGTAGAATATTCATGTGGTACCCTCTCAGATTTTGCACATGTGATACATGTTCCTTCTATTTCTCCAAGTAAAGACCTTCGCATCGCGGTAC
CTATCGTATCAGCTTGACCTTTCATAAGCGGAGATAGAACGAAACGACCATAATAAAGACGCTTACTGTCTGCTTTTGATTCAACACACTTCCACTGTAG
TGTCCGATTGGATACTGGTACTTCCTTTCGAACCATACTAATCGAAATTGATGGGGTCATTGGATCCTTTATTTTTCTTCGAATCTTTTCCTTTTTGATT
TCTAC