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Detailed information on CNT30590223


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EU94|PIP11_ORYSJ, E-value = 4e-54

BLAST vs NONCODE:
NONVVIT001875, E-value = 2e-06

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670956Musa acuminataSetaria viridis3020.4583.33228forward
CNT30325169Musa acuminataAsparagus officinalis31.7190.9483.82241forward

Expression of CNT30590223

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPPKAQAIPWMPTVEHLVLDLTTPMTVRMLM*

>peptide 2 (94 aa)
MRVPSTPLGISGREDCVNQDEGANNLSTQATTLDPSGAVDQDKDHATKGPGNPLDAHGGALGVGLDHTHDGEDADVEEEEGGHEFCYASPVEGP*

Sequence

>CNT30590223
TAGAAAATAAACTTCAAACACAGGTAGCAACATAGCATTATTAAATATACATATTAGGCAACAATTTTGCTGCAATACAGAGAACCACCATATAGCAACA
TAGCGACATTAAATATACACACTAGGCAACAATTGTGGTGCAATACAGAGAAGCATAACGGAGGAAAGCCACAGACAAGATAGATAAAGGAGACACGACA
GAGACCAAGAAATTTTAAGAAAGCTCATGGCCTGCTCTTGAATGGGATTGCCCTGATAACTATCTGTTGGCACATGAGAGTCCCTAGCACTCCTCTTGGC
ATCAGTGGCAGAGAAGACTGTGTAAACCAGGATGAAGGTGCCAACAATCTCAGCACCCAAGCCACCACCCTTGATCCCAGCGGTGCAGTAGACCAAGATA
AAGATCATGCCACCAAAGGCCCAGGCAATCCCCTGGATGCCCACGGTGGAGCACTTGGTGTTGGACTTGACCACACCCATGACGGTGAGGATGCTGATGT
AGAGGAAGAGGAAGGTGGCCATGAATTCTGCTATGCCAGCCCTGTAGAAGGACCATGAGCTGAGCTCCGCTGGCTCAAACAGTGGAGCTGGTGGTGGCTC
CTGGTAGTCCCTGTCCTGACTCTGGGCAGCTGTCCCTATTGCCTGCCTCTCCGAGAACTTGTTTGCTCCCACCCTCACATCCTCCTCTCTCCCCTCCATC
TTACCCCGAGGACACTCTTCTCCGGACTCTAGAACTATATGATGAGCACAGGAAAGAAAC