Detailed information on CNT30590093


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3V4Z3|RR19_ACOCL, E-value = 4e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30304119Musa acuminataTriticum aestivum16.6929.1485.29102forward
CNT30220592Musa acuminataHordeum vulgare15.2237.889.2593forward
CNT30447572Musa acuminataSaccharum spontaneum21.777.7386.47133forward
CNT30684618Musa acuminataTriticum urartu21.7713.9686.47133forward
CNT30720298Musa acuminataTriticum spelta11.7832.5886.1172reverse complement
CNT30349424Musa acuminataEragrostis tef21.7730.4385.71133forward
CNT30415027Musa acuminataPapaver somniferum21.7734.188.72133forward

Expression of CNT30590093

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MNSDCMANHCGYNGRCPRPSYYYFFLLPHVEFFHFFR*

>peptide 2 (64 aa)
MVDARDQVTIISFSSLMLSFSIFSDKWLATKGFFFSERVMSQCITPFFYIFYFKDWHSMSNISI*

Sequence

>CNT30590093
AAAAAAGCATACTTTGTAAGGTCAAAAGCATGATGTTCTCAACTGAAGGCATTAAAATTTCAAAATTTTGAAAATTTAAAATAAGCCGAAACCGTGTAAT
TGAGAGTTCCATACAACAAAATGCTTTGGACAATTTTTGGAGAACTTATAATAATTACATAGTCCTAACCTAAATAACAGTAAAAGATCCATATAGTCGA
CCCCAAACACTTGAGATATTATGACTTTGTTGTGTTATAATTTCAAAAAATTCACTTATAAATATATCAAACCAAGATAGTATATTAGACAGAAAGAAGC
TCCAAACAACAGCATCAGCATAAATTACATGGCTGATGTATGAATAGCGATTGTATGGCCAATCATTGTGGGTATAATGGTAGATGCCCGAGACCAAGTT
ACTATTATTTCTTTCTCCTCCCTCATGTTGAGTTTTTCCATTTTTTCCGATAAATGGTTAGCTACAAAAGGGTTTTTTTTTAGCGAACGTGTCATGTCAC
AGTGTATTACTCCTTTTTTTTACATTTTTTATTTTAAAGATTGGCATTCTATGTCCAATATCTCGATCTAAGTTAAGTATGGAGGTAAGAATAAATACAA
TAATGATGAAT