CANTATAdb - search

Detailed information on CNT30589827

BLAST search results

BLAST vs Swiss-Prot:
sp|P27491|CB27_TOBAC, E-value = 1e-87

BLAST vs NONCODE:
NONBNAT005173, E-value = 3e-36

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696066	Musa acuminata	Oryza sativa	54.65	51.8	88.25	417	forward
CNT30641294	Musa acuminata	Nymphaea colorata	54.78	41.26	86.84	418	forward
CNT30709869	Musa acuminata	Glycine max	51.11	65.33	83.08	390	forward
CNT30345516	Musa acuminata	Eragrostis tef	54.13	55.51	88.38	413	forward
CNT3063784	Musa acuminata	Selaginella moellendorffii	45.87	30.51	86.29	350	forward

Expression of CNT30589827

Peptides detected in this lncRNA

>peptide 1 (33 aa)
PHNKSHSTNQQYNYFASSTAISFNMTEVATCYG*

>peptide 2 (47 aa)
MVTLPPPRTSATEGPNLTALPARDGEESAMVEAIGGRHAARWEEELET

Sequence

>CNT30589827
GCCCGCACAATAAATCCCATAGTACAAATCAACAGTACAACTATTTTGCATCGTCAACAGCAATCTCGTTCAATATGACTGAGGTTGCTACTTGCTACGG
ATGAAGTGTGCCAGGCAGCGGCAGTGGGAGAGGCTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAAGCATTGTTGTTGACAGGGTCGGCGAG
GGGGTCGAAGCTGCCGCCCGGGTAGAGCGGGTCGGTCACCTCTCCCAGCGGCCCGCCAGCGATGCGGTAGCCCTCCACGGCGCCCATCAGGATCACCTGG
CACGCCCAGATGGCCAGAATGCTCTGGGCGTGGATCAAGCTGGGGTTGCCAAGGTAGTCCAGCCCGCCCTCGCTAAAGATCTGCGCGCCAGCCTTGAACC
ACACCGCCTCCCCGAACTTGACCCCGTTCCGGGATAGCAGCTCCGGGAAGACGCAGCCGAGGGCGCCCAGCATTGCCCACCTGCAGTGGATCACCTCCAG
CTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGCCCCGCGGTATTTGACGCGGTCAGGGCCGTACCACGGGCTTCCGGAGGGGGCGGACTTCGG
CTTTGCGCCGGTCTTCCGCATGGTGACCCTTCCTCCGCCGAGGACGTCGGCGACCGAGGGGCCGAATTTGACGGCCTTGCCGGCCAGGGACGGGGAGGAG
AGCGCCATGGTGGAAGCCATTGGAGGACGGCACGCTGCAAGATGGGAAGAAGAGTTGGAGACG