« Back to Musa acuminata search


Detailed information on CNT30589490


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Musa acuminataOryza sativa41.0318.6889.08119forward
CNT30640614Musa acuminataNymphaea colorata42.4119.3483.74123forward
CNT30517210Musa acuminataJuglans regia22.7610.2687.8866forward
CNT30615812Musa acuminataSesamum indicum19.3126.2987.556forward
CNT30502187Musa acuminataNicotiana attenuata37.242.9784.26108forward
CNT30711465Musa acuminataGlycine max35.1721.8482.35102forward
CNT3044720Musa acuminataPrunus dulcis44.1419.4280.47128forward
CNT3097560Musa acuminataSolanum tuberosum25.861286.6775forward
CNT30387764Musa acuminataTriticum turgidum35.1711.592.16102forward
CNT3085478Musa acuminataVigna radiata23.4511.8985.2968forward
CNT30552699Musa acuminataOryza glaberrima34.4825.4584100forward
CNT30659451Musa acuminataTriticum dicoccoides35.1728.4192.16102forward
CNT30227873Musa acuminataAnanas comosus91.3843.0984.15265forward
CNT30595656Musa acuminataOryza meridionalis33.4529.0486.697forward
CNT30704968Musa acuminataPrunus avium4012.8682.76116forward
CNT30112022Musa acuminataFicus carica26.5527.389.6177forward

Expression of CNT30589490

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MTAAPRLRAGLMPVPVMGMVARCTMNTANPMGSGSCTGVS*

>peptide 2 (66 aa)
HMIIPGLVLVVDDCGAKAPSGVDASPGDGNGGEVYHEHGEPDGKWELYWCFMIPFTMPTPTMPPKH*

Sequence

>CNT30589490
TCACATGATCATCCCAGGCCTTGTCCTGGTTGTAGATGACTGCGGCGCCAAGGCTCCGAGCGGGGTTGATGCCAGTCCCGGTGATGGGAATGGTGGCGAG
GTGTACCATGAACACGGCGAACCCGATGGGAAGTGGGAGTTGTACTGGTGTTTCATGATCCCTTTCACGATGCCCACCCCGACGATGCCTCCCAAGCACT
GAGCCACAATATACAGCACCGCCCTTATCAGCGACACCTTCCTCGCTAGGAACAGCCCGAACGTCACCGCCGGGTTGATGTGTCCTCCTG