Detailed information on CNT30589485


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3E6T0|PT525_ARATH, E-value = 1e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104905Musa acuminataOryza longistaminata35.4512.884.2195forward

Expression of CNT30589485

Peptides detected in this lncRNA

>peptide 1 (88 aa)
EGEAAGGDVVKGVEGADGDDGGEVEGAGHGRRRGRVDEAEHADEEDGEGGAEGHVDHGEADGEGPAIHLGIQDVLVVHDHREAEEDPDR

>peptide 2 (60 aa)
MGGDEGGSTRRSTRTRRMARVEQKAMWIMVRLMGKGQPYILGSKMYLLYTITVKLRKIQIA

>peptide 3 (57 aa)
RRGSRGRRSKGSRGRRWGRRRRGRGRGSWAATRAGRRGGARGRGGWRGWSRRPCGSW*

Sequence

>CNT30589485
GAAGGCGAGGCAGCAGGGGGCGACGTAGTAAAGGGAGTAGAGGGCGCCGATGGGGACGACGGAGGAGAGGTAGAGGGCGCGGGTCATGGGCGGCGACGAG
GGCGGGTCGACGAGGCGGAGCACGCGGACGAGGAGGATGGCGAGGGTGGAGCAGAAGGCCATGTGGATCATGGTGAGGCTGATGGGGAAGGGCCAGCCAT
ACATCTTGGGATCCAAGATGTACTTGTTGTACACGATCACCGTGAAGCTGAGGAAGATCCAGATCGCG