Detailed information on CNT30589303


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Musa acuminataOryza sativa28.4723.5987.56209forward
CNT30639906Musa acuminataNymphaea colorata22.4811.5189.09165forward
CNT3042646Musa acuminataPrunus dulcis31.4739.8385.28231forward
CNT30448528Musa acuminataSaccharum spontaneum20.719.7984.87152forward
CNT3067156Musa acuminataLeersia perrieri29.781.0487.61218forward
CNT30128428Musa acuminataCorymbia citriodora22.6211.383.13166forward
CNT30683958Musa acuminataTriticum urartu48.0931.7286.12353forward
CNT30361799Musa acuminataSorghum bicolor39.2430.2283.33288forward
CNT30596039Musa acuminataOryza meridionalis20.0356.1187.76147forward
CNT30641906Musa acuminataCannabis sativa29.2924.3280215forward
CNT30100699Musa acuminataOryza rufipogon26.4317.6488.14194forward
CNT30579178Musa acuminataEchinochloa crusgalli40.8724.4986.33300forward
CNT30116140Musa acuminataOryza nivara55.1852.5385.93405forward
CNT30603857Musa acuminataOryza punctata25.6121.6188.83188forward

Expression of CNT30589303

Peptides detected in this lncRNA

>peptide 1 (49 aa)
PKQTSDLPKLFYYWTIHWGKYKGQRRRRRRRRKMMRSRDLHVDVSCGYI*

>peptide 2 (33 aa)
QSKQAICQSFFTIGRYTGENTKGRGGGGGGGGR*

>peptide 3 (43 aa)
MSLRKSSGRRMAAMMPIMAETEWPTKKQRSMWRASRMSRRSST*

>peptide 4 (38 aa)
AKANKRFAKAFLLLDDTLGKIQRAEEEEEEEEEDDEIT*

>peptide 5 (46 aa)
MPTDPCRSRATAPPPAPRYPPPARSATPAACRCFFHRLPPPPPPLLL

Sequence

>CNT30589303
GCCAAAGCAAACAAGCGATTTGCCAAAGCTTTTTTACTATTGGACGATACACTGGGGAAAATACAAAGGGCAGAGGAGGAGGAGGAGGAGGAGGAGGAAG
ATGATGAGATCACGTGACCTCCACGTGGATGTCTCTTGTGGATACATCTAAGACGAAAGGGACGACCGACCAAATTTTATTCTCCACGTATCATCAGCCA
TACCCAGTTTGACTCGGAAGCGGAGGTGGTGGGCCCTGCTGTGGCTGGTGGTGATGGTGATCAGCGGTGGGAGGCGATGGCGCGGCGGAGGACCTGGACG
AGGACGGCGGGGGAGCTGAGGTGGGGGAGGCGCCGACGAGGATGAGCTTGAGGAAGAGCTCAGGGCGGCGGATGGCGGCTATGATGCCGATCATGGCGGA
GACGGAGTGGCCGACGAAGAAGCAGCGGTCGATGTGGAGGGCGTCGAGGATGTCTAGGAGGTCGTCGACGTAGGCGTCGAGGGTGGTGTAACGACGGAAG
TCGAAGTGGTCCGGGTTGACGCTGCCGGCGCAGACCAAGTCGTAGAGGACGACGCGGTAGTCGCGTTGGAAGTAGGGGAGGACGCGGTTCCATGCCGACT
GATCCGTGCCGAAGCCGTGCGACAGCACCACCACCCGCTCCCCGCTACCCACCACCCGCACGTTCAGCAACTCCAGCAGCTTGCCGCTGCTTCTTCCACC
GCCTCCCGCCTCCGCCGCCGCCGCTGCTGCTGCG