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Detailed information on CNT3058916


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70Y15|RR16_AMBTC, E-value = 1e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696488Amborella trichopodaOryza sativa11.3321.0787.55233forward
CNT30277302Amborella trichopodaChenopodium quinoa11.7742.4685.95242forward
CNT30727992Amborella trichopodaCorchorus capsularis11.2835.6990.95232forward
CNT30393155Amborella trichopodaTriticum turgidum8.5627.286.36176forward
CNT30435419Amborella trichopodaAegilops tauschii11.0926.0986.84228forward
CNT30659176Amborella trichopodaTriticum dicoccoides11.0969.387.28228forward
CNT30610242Amborella trichopodaGossypium raimondii10.9954.8588.94226forward
CNT30229322Amborella trichopodaAnanas comosus3.0226.2791.9462reverse complement
CNT30655380Amborella trichopodaRosa chinensis11.7229.3291.7241forward
CNT30127870Amborella trichopodaCorymbia citriodora8.4631.2487.93174forward
CNT30685543Amborella trichopodaTriticum urartu8.4163.1486.71173forward
CNT30424174Amborella trichopodaPapaver somniferum11.7746.6392.56242forward
CNT30150933Amborella trichopodaBrachypodium distachyon7.7359.7785.53159forward
CNT30576782Amborella trichopodaOryza barthii11.3322.7187.55233forward

Expression of CNT3058916

Peptides detected in this lncRNA

>peptide 1 (39 aa)
FLISFFFHTLLIHFIYFKHFKFIELNIFYVHIDCIYSIT*

>peptide 2 (41 aa)
MNREIEKRRMVKKQLNKARYWSLFYEFHLINSKLFKYLRLL*

Sequence

>CNT3058916
CTTTCTTATTTCTTTTTTTTTTCATACTTTACTTATTCATTTCATTTATTTCAAACATTTCAAATTTATTGAATTAAATATATTCTATGTACATATTGAT
TGTATATATTCTATTACTTAATAGACCTTTTCTATTTATTTAATTGATAATTGAATATTTTCATTCTTTTATTTTAATTCTTTTAATTTATATACCTTTA
AACCCCGAATATTTCTCTATTTGAATATTTCTCTATTTGAATATTTCTCTATTCTAATTCTATTATTCTAATATTCAACTATTAGATATTAGAAATGGAA
TAAATATAAATTGAATAAATAAATTGAATAGAATATTCAAATAAAATAATTCAATTCAATATTTCAGTTCTATATTAGAATTAGATTCTTATTCTACTTT
TCTTTTTATATTTTTTTTTATTTGAATTCAAAATATCAAAATATTCCTTTTATTAATATTTCTTAATATGTTGAATATCAATTCCATTAAGAATAAAAGA
TATTTATTGCGTCTGTGATAGTGGATAGGGCCAACCAATTGTTTGAGTGAAGTAAAGGATCGAACTAAACTTATGGACCGGAGGAAATAGATCTGTTTAT
CTACGATCGAATTATATCGGTTGAATACACCATTGTCAATATGAATGTTGGGAAAAATAAAATAAATAAGACATTGTCTTAAATTGGTACTACATGGATA
AAAAATAGAATGTGGCTGGAAGAATAAATCATAAATAATAAAAAAGGTAAGGAAAAATAGAATAATAAGAATAAATAGTAAGATTCATACTAATACATTT
ATAACTATTTAATTTTGATTATTATATTCTTTTTTTTTTATTTCCATTTAATTTTAATTTCTATATTCTTTTATTTTATTACTTATTAATCTATTCTATA
TCTATAGAATTCTATAGAAAAATAGAATTCTATAGAAAAATACAAATTTCTTACAAAATCCAAAACATACAAAACAAATATTTACAAATACAAATACTGT
ACAAATATTCAAATTCATATTTCATATTCATTAATAAGAAATTAATAATAAATAAGAATTTACTGAACATTCATAATAAATGTACTGAATATTTTCATTA
ACAATTAATTGATTAATTATTGATTAATAGAAAATCAAATTAGAATTGAAATAATTAAAATATAAAAAAGAGAAATAAAAAAGAATTCTAAAAATTCTAA
TTTGTATTAATGGAAAAGGGTTCGTTGTGCTTAGCTTATACGATATTGGATCATATGAGATCCGTAGTGAATAGGTATGAATAGAGAAATAGAAAAAAGG
AGAATGGTGAAAAAACAATTGAACAAAGCTAGATACTGGTCACTCTTTTATGAATTTCATTTGATTAACTCCAAGTTATTTAAATACCTCCGCCTTCTTT
GAAATATCATGAACAGTTACTGTAGGCTGAGCTCCTTTTTCAAGGAAATATAGAATAGCAGGAACGTTTGAATAAGTTTGATTCTTTATTGGATCGTAAA
AACCCACTTTCCGAAGAGCTCTTCCGTCTCTTCGGGATCTAACATCAATTGCAACGATTCGATAAATGACTCGTTGCTTTCTACCACATCGTTTCAAACG
AAGTTTTACCATAACATTCCTGATCCTAAATTTAGAACCGGTATGAAATTTTGATTCAATTTCAATATGGAATCATGAATAGTCATTGGTTGAATTGGTT
TGGTACTGGTACATAGTACATAGTTTTTATTACACCCACCTAATTTATCCATAGACATGGATAGGTACCTATCTGGAAGTATCAGCAAGGATCCAATTTG
ACCCGATTCTATCGTATGAAGGAAATCTATTCTATAAAATAAAAAAAAAAAAGAAATCAAAGACATTTATGATATGAGATAAACAAGTTGCTTAACACTT
ATTTTTTACCAGATTCCGTTCGGGACAATCAGTCATGAAGGGTTCGATTCTTTCTAGAACGACGAACGATTGAATTGGATTCCCAATACCGGAACAGAAG
GAGTCATTAACTGAATAAGCTAAGCTATTCCAGTTATCCGGAAGGAAAGAAAGGCT