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Detailed information on CNT30589135


BLAST search results

BLAST vs Swiss-Prot:
sp|J9U5U9|DAD2_PETHY, E-value = 2e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522336Musa acuminataSetaria italica28.9141.8989.19111forward
CNT30524833Musa acuminataPhaseolus vulgaris47.1411.9690.06181forward
CNT30296550Musa acuminataTriticum aestivum32.8130.1492.06126forward
CNT30553208Musa acuminataOryza glaberrima32.2913.7290.32124forward
CNT30241770Musa acuminataAvena sativa15.3620.1488.1459forward
CNT301613Musa acuminataZea mays31.7721.487.7122forward
CNT30683865Musa acuminataTriticum urartu33.0730.0292.13127forward
CNT30369879Musa acuminataOryza glumipatula31.7716.9986.89122forward
CNT30147849Musa acuminataBrachypodium distachyon32.2928.1288.71124forward
CNT30575527Musa acuminataOryza barthii31.7719.3386.89122forward
CNT30116295Musa acuminataOryza nivara31.7712.9586.89122forward

Expression of CNT30589135

Peptides detected in this lncRNA

>peptide 1 (52 aa)
GPAVAGGDGDQRWEAMARRRTWTRTAGELRWGRWPSMGRSSMVVRPPRWALR*

>peptide 2 (34 aa)
MSGLMLNSVRLNSRTAAGTSAPTASGANPCTHAS*

Sequence

>CNT30589135
GGCCCTGCTGTGGCTGGTGGTGATGGTGATCAGCGGTGGGAGGCGATGGCGCGGCGGAGGACCTGGACGAGGACGGCGGGGGAGCTGAGGTGGGGGAGGT
GGCCCTCGATGGGGAGGAGCTCGATGGTGGTGCGGCCGCCGAGGTGGGCCTTGAGGTAGGCGGCGACGGAGGGGGTGCGGACGAGGCCCAGCACCCCGCG
CAGGTCGCTGTTTACCACCGTCCGCGACACGAACAGCGAGATGTCCGGCCTCATGTTGAACAGCGTCCGGCTGAACTCCCGCACCGCCGCCGGCACGTCC
GCCCCCACCGCCAGCGGCGCGAACCCCTGCACCCACGCCTCGTAGTTCGCCTCCATCGCCGCGAATACCTTCTCGAACTCTTCC