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Detailed information on CNT30588421


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41608|SUS1_TULGE, E-value = 7e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677855Musa acuminataSetaria viridis37.9420.983.18107forward
CNT30522214Musa acuminataSetaria italica25.899.3284.9373forward
CNT30530439Musa acuminataEucalyptus grandis34.758.4686.7398forward
CNT30305412Musa acuminataTriticum aestivum21.6320.5486.8961forward
CNT30662767Musa acuminataTriticum dicoccoides42.9158.1785.95121forward
CNT30445673Musa acuminataSaccharum spontaneum37.2339.3383.81105forward
CNT3067157Musa acuminataLeersia perrieri42.9126.1383.47121forward
CNT30361636Musa acuminataSorghum bicolor31.2123.9186.3688forward
CNT3023679Musa acuminataPopulus trichocarpa63.8331.9780.56180forward

Expression of CNT30588421

Peptides detected in this lncRNA

>peptide 1 (50 aa)
VNGVSQVCCFYQIAIFEGIEHLKVAASLAPIEVGDILPETINSRQCHQPL*

Sequence

>CNT30588421
AAGTAAATGGAGTAAGCCAGGTGTGTTGTTTTTACCAAATTGCGATATTTGAGGGCATAGAACATCTCAAGGTAGCGGCGAGTCTCGCGCCTATCGAGGT
TGGAGACATACTTCCAGAAACCATAAACTCCAGACAGTGTCATCAGCCTCTCTGAATAGAGCTTCCAGGCCTCCCTGTGAGATTTTGTCCCAGCAGGTTG
GGTCTTCCTTGCACTTCTCAAAGAAATTTACAATGATTTCAGCAGCCTTGTCACCCTGGTAAGGATCAATGTGGAAGCCAGA