Detailed information on CNT30588329


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SFX0|PBL22_ARATH, E-value = 2e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701055Musa acuminataQuercus lobata19.3880.0878.61201forward
CNT30465446Musa acuminataSaccharum spontaneum54.8726.8579.79569forward
CNT30350229Musa acuminataEragrostis tef31.7321.0879.03329forward

Expression of CNT30588329

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MEEAASVSCKDARGGSPVPCNRRLGSSHSSPHSNRSKRQGGCVGAWKASQSQSGIDGHLGRTSG*

>peptide 2 (59 aa)
VDALNVLFEFLISEKVTLRASHSEPVTPIIGVFIFYPDKQHSLIGDPSIDAVTFLCSFL*

>peptide 3 (48 aa)
MDTLVGHRVSTLDGHLCDPTIYLPTVDLSEPTNSKKKGLIEVICGSFYL

>peptide 4 (44 aa)
MIMSSMPFFWQCSTHSDKLTFSSESMGLRAGRAHRTSNSTTPKE*

>peptide 5 (54 aa)
MLSLSSALSCSWRASSRFRTTSTMDGRSFPVSAKHFTAVSTNHLKLSGAILSFK*

>peptide 6 (51 aa)
MYDGMLGTGVKVMQTACSPDADLKPLFPWKRRLLCLAKMLAEGPLCHVIVD*

Sequence

>CNT30588329
CGTAGATGCACTTAACGTCTTATTTGAGTTTTTAATCTCTGAGAAGGTGACGCTAAGAGCCAGTCACTCAGAGCCAGTGACTCCGATCATCGGAGTTTTT
ATTTTCTATCCCGACAAACAACACAGTCTCATCGGAGATCCCTCCATCGATGCTGTCACTTTCCTCTGCTCTTTCCTGTAGTTGGAGGGCAAGCTCAAGG
TTCCGAACCACATCAACCATGGATGGTCGTTCCTTCCCAGTATCAGCCAAACATTTCACTGCAGTCTCTACAAACCACTTGAAACTCAGTGGAGCAATCT
TATCCTTCAAGTAGGGATCAATGATCATGTCGAGCATGCCATTCTTTTGGCAGTGCAGTACCCACTCCGACAAGCTCACCTTTTCATCTGAAAGCATGGG
GTTAAGAGCTGGCCGAGCACACAGGACCTCAAACAGCACGACCCCAAAAGAGTAGACATCAGATTTCTCTGTGAGCTGCATCTTTCTAAAGTACTCTGGA
TCGAAGTAACCAAAGCTTCCCTTCACCACCGTGCTGACATGGGACTCGTCGGCGTTCGGACCAATCTTCGAGAGCCCGAAATCTGAAACTTTTGCAACCC
CTTTGTCATCTAACAGTATGTTTGTTGCCTTCACATCTCGATGTATGATGGTATGCTTGGCACCGGTGTGAAGGTAATGCAGACCGCGTGCAGCCCCGAT
GCAGATCTCAAGCCGCTGTTTCCATGGAAGAGGCGGCTTCTGTGTCTTGCAAAGATGCTCGCGGAGGGTCCCCTGTGCCATGTAATCGTAGACTAGGATC
ATCTCACAGTTCTCCTCACAGTAACCGATCAAAGAGACAAGGTGGTTGTGTCGGAGCATGGAAAGCATCTCAATCTCAGTCTGGAATTGATGGACACCTT
GGTCGGACATCGGGTTAGCACGCTTGATGGCCACCTTTGTGATCCCACCATCTATCTCCCCACGGTAGACCTTTCCGAACCCACCAACTCCAAGAAGAAG
GGACTCATCGAAGTCATTTGTGGCAGCTTTTATCTCT