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Detailed information on CNT30587002


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672556Musa acuminataSetaria viridis38.5231.5287.5104forward
CNT30511330Musa acuminataSolanum lycopersicum50.7433.5885.4137forward
CNT30555589Musa acuminataOryza glaberrima55.198.5491.95149forward
CNT30652852Musa acuminataRosa chinensis56.338.1988.16152forward
CNT30721746Musa acuminataTriticum spelta61.8510.3989.22167forward
CNT30367313Musa acuminataSorghum bicolor29.2613.9194.9479forward
CNT30596728Musa acuminataOryza meridionalis31.8517.7394.1986forward
CNT30371441Musa acuminataOryza glumipatula31.8521.0893.0286forward
CNT30646445Musa acuminataCannabis sativa22.9617.9788.7162forward
CNT3024196Musa acuminataPopulus trichocarpa57.7834.3683.97156forward
CNT30322486Musa acuminataAsparagus officinalis59.2634.1290160forward
CNT30150825Musa acuminataBrachypodium distachyon61.8528.2191.62167forward
CNT30104395Musa acuminataOryza rufipogon55.1930.1691.95149forward
CNT30578506Musa acuminataOryza barthii31.855.4193.0286forward
CNT30117442Musa acuminataOryza nivara31.8521.1393.0286forward

Expression of CNT30587002

Peptides detected in this lncRNA

>peptide 1 (89 aa)
GSCWKCSKPFWPTCLKLIKNSGTSWLDPEIVFKLASVAAACPLRRPVLLAAMRPTFCPGGASRRTVEACPMCWWFPPPWGCSTGFIATPR

>peptide 2 (42 aa)
EVVGSAASHFGQHVSSSSRIQGRAGWIRRSCSNWHQWQQPVP*

>peptide 3 (88 aa)
KLLEVQQAILANMSQAHQEFRDELVGSGDRVQIGISGSSLSPETTSPPCSNETDLLPRRSITADGGGMSNVLVVSSSVGMLHRVHSHTS

Sequence

>CNT30587002
GGAAGTTGTTGGAAGTGCAGCAAGCCATTTTGGCCAACATGTCTCAAGCTCATCAAGAATTCAGGGACGAGCTGGTTGGATCCGGAGATCGTGTTCAAAT
TGGCATCAGTGGCAGCAGCCTGTCCCCTGAGACGACCAGTCCTCCTTGCAGCAATGAGACCGACCTTCTGCCCAGGAGGAGCATCACGGCGGACGGTGGA
GGCATGTCCAATGTGCTGGTGGTTTCCTCCTCCGTGGGGATGCTCCACAGGGTTCATAGCCACACCTCGG