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Detailed information on CNT3058691


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70XZ5|RBL_AMBTC, E-value = 1e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Amborella trichopodaOryza sativa73.837.1487.58330forward
CNT30678279Amborella trichopodaSetaria viridis52.1327.1685.41233forward
CNT30201083Amborella trichopodaPisum sativum74.0515.587.92331forward
CNT30187653Amborella trichopodaSecale cereale73.8354.1987.58330forward
CNT30292770Amborella trichopodaTriticum aestivum73.8324.2887.27330forward
CNT30225281Amborella trichopodaHordeum vulgare25.534.0390.35114forward
CNT30565170Amborella trichopodaActinidia chinensis39.615.593.22177forward
CNT30541452Amborella trichopodaBrassica napus74.7220.0487.72334forward
CNT30239038Amborella trichopodaBrassica oleracea69.825.0285.9312forward
CNT30554212Amborella trichopodaOryza glaberrima68.238.0987.87305forward
CNT30146680Amborella trichopodaMedicago truncatula54.1419.3189.26242forward
CNT30434683Amborella trichopodaAegilops tauschii73.8355.4686.67330forward
CNT30257373Amborella trichopodaAvena sativa73.8349.786.97330forward
CNT3060115Amborella trichopodaArabidopsis lyrata75.3914.2187.54337forward
CNT302912Amborella trichopodaZea mays68.2338.0886.89305forward
CNT30606537Amborella trichopodaGossypium raimondii74.9419.9386.87335forward
CNT30627897Amborella trichopodaDaucus carota25.737.6491.3115forward
CNT30687498Amborella trichopodaTriticum urartu73.8324.387.27330forward
CNT30477828Amborella trichopodaArabidopsis halleri30.8727.1186.96138forward
CNT30622174Amborella trichopodaCajanus cajan23.4914.4292.38105forward
CNT30355674Amborella trichopodaLactuca sativa49.8930.2291.93223forward
CNT30100001Amborella trichopodaOryza rufipogon56.1597.2988.45251forward
CNT30578317Amborella trichopodaOryza barthii43.440.0884.54194forward

Expression of CNT3058691

Peptides detected in this lncRNA

>peptide 1 (42 aa)
ASKATRLATAPGAFPQGCPRVPPPNCNTESSPKISVRAEHLA*

Sequence

>CNT3058691
CGCTTCTAAAGCCACCCGATTAGCTACTGCACCGGGTGCATTTCCCCAAGGGTGTCCCAGAGTTCCTCCGCCGAACTGTAATACGGAATCATCCCCAAAG
ATCTCGGTCAGGGCAGAACACCTGGCATAGATACCCAATCTTGAGTGAAATAAATACCGCGACTTCGGTCTTTTTCAATAAAATCATCACGTAGTAGATC
AACAAAACCCAAAGTGACATCCCGTTCCCCTTCCAGTTTACCTACTACGGTACCAGCGTGAATATGATCCCCACCAGACATACGCAATGCTTTAGCTAGT
ACACGAAAGTGTATACCATGATTCCTTTGTCTATCAATAACTGCATGCATTGCGCGATGAATGTGAAGAAGTAGGCCATTGTCTCGGCAATAATGGGCCA
AACTAGTATTTGCAGTGAATCCTCCTGTTAAGTAGTCATGCATTACG