Detailed information on CNT30585997


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628366Musa acuminataVigna unguiculata43.487.787.27110forward
CNT3096327Musa acuminataSolanum tuberosum35.1811.1984.2789forward
CNT30510798Musa acuminataSolanum lycopersicum35.1834.3684.2789forward
CNT30681317Musa acuminataTriticum urartu35.1818.1689.8989forward
CNT30720265Musa acuminataTriticum spelta41.1138.2490.38104forward
CNT30365159Musa acuminataSorghum bicolor48.6236.589.43123forward
CNT30570728Musa acuminataVitis vinifera33.215.0386.984forward
CNT30645006Musa acuminataCannabis sativa30.049.2385.5376forward
CNT3026679Musa acuminataPopulus trichocarpa41.58.8581.9105forward
CNT30329937Musa acuminataDioscorea rotundata26.096.3789.3966forward

Expression of CNT30585997

Peptides detected in this lncRNA

>peptide 1 (83 aa)
DGGGVTGDRGGSVVLGGEDVAGAPADLGTEGGEGLDEDGGLDGLGRAELRAAGHEPGHLHLRELDLQAAEVSLGEILHLVLAPR

>peptide 2 (31 aa)
RRRSHGRSRRQRGPGWRRCCRSTSGPRHRGR*

>peptide 3 (83 aa)
TAAESRAIAAAAWSWVEKMLQEHQRTSAPRAVRDSMRTAVWMGLDGPNSARQAMSPGISTSASSISRRPKSAWERSFTLYSRPV

Sequence

>CNT30585997
GACGGCGGCGGAGTCACGGGCGATCGCGGCGGCAGCGTGGTCCTGGGTGGAGAAGATGTTGCAGGAGCACCAGCGGACCTCGGCACCGAGGGCGGTGAGG
GACTCGATGAGGACGGCGGTCTGGATGGGCTTGGACGGGCCGAACTCCGCGCGGCAGGCCATGAGCCCGGGCATCTCCACCTCCGCGAGCTCGATCTCCA
GGCGGCCGAAGTCAGCCTGGGAGAGATCCTTCACCTTGTACTCGCGCCCCGTC