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Detailed information on CNT30585954


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3089434Musa acuminataVigna radiata73.7971.9992.291154forward
CNT30206613Musa acuminataHelianthus annuus73.7966.493.241154forward
CNT30356368Musa acuminataLactuca sativa79.696.2192.211245forward
CNT3027145Musa acuminataPopulus trichocarpa79.9976.4794.321251reverse complement

Expression of CNT30585954

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MNRKPGYGAQLRANPDTTKGVGRLRQQDGGHGSRNPLRSV*

>peptide 2 (65 aa)
MEQCRISGSRFAGGSEIPLLLTLFYLFRESEAGPGPSFWTQGPPSGPIRAEDIVRWGVWLGRHIC*

>peptide 3 (61 aa)
AGYTRDLGIGQWAPHPTHLETRTKESDMRASRRVRKPGRHKEANGREPSRGVAPPADPDLL*

Sequence

>CNT30585954
GCGGGGTACACACGCGACCTAGGCATCGGCCAGTGGGCTCCCCATCCGACCCATCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGG
TGCGGAAACCCGGAAGGCACAAGGAAGCTAACGGGCGGGAACCCTCTCGAGGGGTTGCACCGCCGGCCGACCCCGATCTTCTGTGAAGGGTTCGAGTTGG
AGCATGCATGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGAGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGATACTGACGTGCAAAT
CGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCACGTGCGA
GTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTTCGTTG
AGCCGCGTCGCGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCGGGTTACGGTGCCCAACTGCG
CGCTAACCCAGACACCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGC
CGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCCGGCCATCGGGGCGAGCGCCAAGCCCCGATGAGTAGGAGGGCGCGGCGC
TCGCCGTAAAACCCAGGGCGCGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGA
GGGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGCCGATCCTAAGGGACGGGGGAAGCCCGTCCGAGAGCGTGTCTCCACGCGAGCTCCGAAA
GGGAATCGGGTTAAAATTCCCGAGCCGGGACGCGGCGGCGGACGGCAACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCCCCGGGAAGAGTTATCTTTTC
TGCTTAACGGCCCGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGTCGGAAGAGCGCCGCACGTCGCGCGGCGTCCGGTGCGCCCCCGGC
GGCCCTTGAAAATCCGGAGGACCGAGTGCCGCCCGCGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCCATGGAACAAT
GTAGGATAAGTGGGAGCCGGTTCGCCGGCGGAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAGGCGGGGCCCGGCCCCTC
CTTTTGGACCCAAGGCCCGCCTAGCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAG
GTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTT