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Detailed information on CNT30585682


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30587177Echinochloa crusgalliMusa acuminata5.9421.0486.9669forward
CNT30458997Echinochloa crusgalliSaccharum spontaneum14.1120.0594.51164forward
CNT30100086Echinochloa crusgalliOryza rufipogon12.7424.5489.19148forward
CNT30495742Echinochloa crusgalliDigitaria exilis26.332188.24306forward
CNT30556241Echinochloa crusgalliPanicum hallii51.8133.7884.55602forward

Expression of CNT30585682

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MHLNCPAISLRAVSGVDTVGVYGMVRDSIKNYSFQCHE*

>peptide 2 (54 aa)
PPKMQFRMATACSNDLSTRSCAPSRLRYVDARGGDELEAATAYLARKLVFGPYL*

>peptide 3 (71 aa)
MMLCYVLDLLINFFNKPDTRGTDCKKTEPIARLGNGTSSVKQAFFSLGTCKSCFDNLKEKARLLQLLPLFV*

>peptide 4 (45 aa)
MGWSATVLKIIHSSVMSNQTQVAKMHFPVEVILLIKVSAGFGVGG*

>peptide 5 (47 aa)
MFRVLNIYTRCMGTNWRSDALELPCNILEGSFWCRHCWSLWDGPRQY*

>peptide 6 (36 aa)
MRWQANSMKKKGCTDCLLSVRSDSSVVNVQGAQYLH*

>peptide 7 (43 aa)
MKLYFVIKQIQSLVVHICNVEVILLVLFSFGSSSSMLRWCFVS*

>peptide 8 (37 aa)
PPLKCSSEWLPLAVTISRPAAARRRVSDMLMQGVVTS*

>peptide 9 (33 aa)
MIFLQVVQLLSQACCLPLPKLPRKAQVMLLMNT*

Sequence

>CNT30585682
CCCCCCCTAAAATGCAGTTCAGAATGGCTACCGCTTGCAGTAACGATCTCTCGACCCGCAGCTGCGCGCCGTCGCGTCTCAGATATGTTGATGCAAGGGG
TGGTGACGAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGGACCATACCTATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAG
CTTGCTGCCTCCCTTTGCCAAAACTACCAAGGAAAGCACAGGTTATGTTATTGATGAACACATAGGCCAAACTTAAGCATGTGTTTGTAACAAGCAGGAC
ACTATACTAATGAAATCTTGTAGCATGAAGTAATATTTTCCAGCATTATACTTGCAAAGCAGATATTAGGTTAAAAAATTGCTGCCCATTTTATAGCATG
AAGTTATATTTTGTTATTAAGCAAATACAAAGCTTGGTTGTCCATATTTGCAATGTGGAGGTTATCTTATTGGTTTTGTTTAGCTTTGGATCATCAAGCA
GTATGTTAAGGTGGTGCTTTGTGAGCTAGCCAACTATATATTTCAGCTGACACTGTCGCCACTATGCGGTGGCAAGCAAACTCCATGAAGAAAAAAGGGT
GCACTGATTGCCTTTTGTCTGTCCGTTCTGATTCTTCTGTAGTCAATGTTCAGGGTGCTCAATATCTACACTAGATGTATGGGGACAAATTGGAGGTCAG
ATGCACTTGAACTGCCCTGCAATATCCTTGAGGGCAGTTTCTGGTGTCGACACTGTTGGAGTTTATGGGATGGTCCGCGACAGTATTAAAAATTATTCAT
TCCAGTGTCATGAGTAATCAAACTCAAGTGGCAAAGATGCACTTTCCAGTTGAAGTAATATTGCTGATTAAAGTATCTGCTGGATTTGGTGTTGGAGGAT
GAGAAATTCCAATTAATATGCAGTGGAAGAATTCAAGGTCCTATGATGCTCTGTTATGTGTTGGATCTCCTAATTAATTTTTTTAACAAACCAGACACGA
GAGGTACCGATTGTAAGAAGACGGAACCTATAGCTAGATTGGGCAATGGTACTTCCTCTGTGAAGCAGGCTTTTTTTAGTTTGGGAACATGTAAATCTTG
CTTTGATAATTTGAAAGAAAAGGCACGCCTATTGCAACTTCTTCCCCTTTTTGTGTAATCTT