« Back to Echinochloa crusgalli search


Detailed information on CNT30585629


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30344054Echinochloa crusgalliEragrostis tef35.7828.5292.31156reverse complement
CNT30705533Echinochloa crusgalliPrunus avium29.3614.8882.81128reverse complement
CNT30150293Echinochloa crusgalliBrachypodium distachyon33.728.7286.39147reverse complement

Expression of CNT30585629

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVRFESCNGAFKKVLSESIFSVLLTRAALFYFFKFLFVVSKVTISNSLFFFIILLY*

Sequence

>CNT30585629
TATATTTATATAAAAAAAAATCTTTCTTTTTTTTTTTTTGAATCTCCTTATTTTTATTCTTATTGAATCGTGGTAAAGTATTCTAATATTTCGCGGGCGA
ATATTTACTCTTTCCTGTCTTATTTGTTAATTTAGAACCTTATCAAATAAAGCCATTTTTTGGTTTGTTCCGCCATCCCACCCAATGAAGCGTTAGGATT
CGTTTCAATAAAATCCGATGCCGTCATAGGTTTTGTCGTTCCCACAGCTTCTCCTTTAATGGTTAGGTTTGAATCCTGCAATGGAGCTTTCAAAAAAGTT
CTTTCCGAGTCAATTTTCTCAGTTTTATTAACGCGGGCTGCTCTTTTTTATTTCTTTAAATTTTTATTTGTTGTTTCAAAAGTTACGATTTCGAATTCTC
TCTTTTTTTTTATTATTTTATTATATTGATGCTTTA