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Detailed information on CNT30585598


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 2e-175

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30285966Echinochloa crusgalliTriticum aestivum71.09100.2693.78386forward
CNT30383121Echinochloa crusgalliTriticum turgidum82.1481.3996.41446reverse complement
CNT30434067Echinochloa crusgalliPapaver somniferum80.8563.3593.39439forward

Expression of CNT30585598

Peptides detected in this lncRNA

>peptide 1 (60 aa)
RIAGPHPLPSRQFQALFDSLFKSFSSFPRGTCSLSVSRLYLALDGVYRPIWAAFPNNPTR*

>peptide 2 (40 aa)
ASPAPIRFPPGNFKHSLTLFSNPFHLSLAVLVRYRSLACI*

Sequence

>CNT30585598
CGCATCGCCGGCCCCCATCCGCTTCCCTCCCGGCAATTTCAAGCACTCTTTGACTCTCTTTTCAAATCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGC
TATCGGTCTCTCGCCTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCCAAACAACCCGACTCGTTGACGGCGCCTCGTGGTGAG
ACAGGGTCCGGGCCGGACGGGGCTCTCACCCTCCCAGGCGTCCCTTTCCAGGGAACTTGGGCCCGGTCCGTCTCTGAGGACGCCTCTCCAGACTACAATT
CGGGCAACGAAGCTACCCGATTCTCAAGCTGGGCTGTTCCCGGTTCGCTCGCCGTTACTAGGGGAATCCTTGTAAGTTTCTTCTCCTCCGCTTATTTATA
TGCTTAAACTCAGCGGGTAGTCCCGCCTGACCTGGGGTCGCGGTCCGAGCGACAGTGCGCTTCGGTTGTACATGGGTCCTTAGGGCCATCAAGCTAGCTG
CGTGCCGGGACGCTGCACCGAGAACAACTTGTAGTCGCCCACC