Detailed information on CNT30585575


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 1e-90

BLAST vs NONCODE:
NONMEST004097, E-value = 3e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30505987Echinochloa crusgalliNicotiana attenuata44.2368.6987.61226forward
CNT30712097Echinochloa crusgalliGlycine max43.6418.6988.34223forward
CNT30160120Echinochloa crusgalliPistacia vera71.4329.3689.86365forward
CNT30637620Echinochloa crusgalliCapsicum annuum45.612.1486.7233forward
CNT30173274Echinochloa crusgalliTrifolium pratense67.9125.886.17347forward
CNT30665783Echinochloa crusgalliTriticum dicoccoides66.9337.5491.52342forward
CNT30203418Echinochloa crusgalliHelianthus annuus41.4951.8387.74212forward
CNT30721805Echinochloa crusgalliTriticum spelta45.9916.2789.79235forward
CNT30368387Echinochloa crusgalliSorghum bicolor75.5444.7392.75386forward
CNT3024873Echinochloa crusgalliPopulus trichocarpa67.7161.3587.57346forward
CNT30176122Echinochloa crusgalliVigna angularis73.7833.386.47377forward
CNT30724026Echinochloa crusgalliLupinus angustifolius71.4325.3586.3365forward

Expression of CNT30585575

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MMMTWEVKLAASLAGSSLELERLMVHLNRLHLSGQATGSKGDNHTRLDDTSFNTTNRHSSNTTNLVHILKGETQGLV*

>peptide 2 (63 aa)
SNVGGVAIQHWGIAIANLTRVVHDDDLGGEAGSLLSRVILGVGAPHGASQQTSPQWSGHWVQR*

Sequence

>CNT30585575
AGCAATGTGGGAGGTGTGGCAATCCAGCACTGGGGCATAGCCATTGCCAATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCC
TCCTTAGCAGGGTCATCCTTGGAGTTGGAGCGCCTCATGGTGCATCTCAACAGACTTCACCTCAGTGGTCAGGCCACTGGGTCCAAAGGTGACAACCATA
CCAGGCTTGATGACACCAGTTTCAACACGACCAACAGGCACAGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCTG
AAGGCCTCTTCGGCTCATTGATCAAGTCAAGAGCCTCAAGCAGCGTTGGGCCCTTGTACCAGTCCAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTC
AAAACCAGAGATAGGAACAAAGTGAATCTTGTCAGGGTTGTATCCAACCTTCTTGAGGTAGGAAGAGACTTCCTTCACGATCTCATCATAACGGGCCTTC
GAGTACTTGGG