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Detailed information on CNT30585568


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673182Echinochloa crusgalliSetaria viridis19.4921.5192100forward
CNT30288144Echinochloa crusgalliTriticum aestivum19.326.7690.9199forward
CNT30386294Echinochloa crusgalliTriticum turgidum19.326.990.9199forward
CNT30564261Echinochloa crusgalliActinidia chinensis19.335.2387.8899forward
CNT30233912Echinochloa crusgalliBrassica oleracea14.6233.488875forward
CNT30658093Echinochloa crusgalliTriticum dicoccoides19.322.6590.9199forward
CNT30608684Echinochloa crusgalliGossypium raimondii18.7122.885.4296forward
CNT3067093Echinochloa crusgalliLeersia perrieri19.4922.3792100forward
CNT30646927Echinochloa crusgalliRosa chinensis19.329.4686.8799forward
CNT30483063Echinochloa crusgalliChara braunii13.0629.6588.0667forward
CNT30645213Echinochloa crusgalliCannabis sativa18.5243.7889.4795forward
CNT30499008Echinochloa crusgalliDigitaria exilis22.0320.2587.61113reverse complement
CNT30594327Echinochloa crusgalliEragrostis curvula19.4928.2591100forward

Expression of CNT30585568

Peptides detected in this lncRNA

>peptide 1 (43 aa)
GRKHPSIGLRFGVVKAKIVIIEPSIGSPSTSQKSAKDNLVKQK*

Sequence

>CNT30585568
GGCAGAAAGCACCCTTCCATCGGCCTTCGTTTCGGTGTGGTTAAAGCAAAAATAGTCATCATCGAGCCATCTATAGGTTCTCCCAGCACATCACAGAAAT
CAGCAAAAGATAATCTAGTGAAACAAAAATAACAAGACGTAGTAAGCTATCTCATGAGTAGCGGTAAGAGAAACGAACTGTAGGACCTACGAGAAAAAGC
GAGAATCTATGGAGAGAAATCGCATGTCCAGAGGTCCAATGGTATGATCTGGCAACTCTTCGCAAACGAAAGCCACGGATCCGCTCGGAGGCGAACATGG
CAATAGATCTTTCAAACGCTAAGAGTGCTCATCAAAGCAAATCTCAACTCAGATGAAAAAAGAGCAAATTTGCGAAAAAACAAAACTCTCCTTCTCGAAC
CTCTTGATCACAAGCCTGTCAATACCTCCAAGCTTGTAAATCAGGTGGCCAGTGGTGGTCGACTTGCCGGAGTCGACATGGCCAATGGCCAGCGGCGGGA
TGCAGAGGAGAAC