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Detailed information on CNT30585446


BLAST search results

BLAST vs Swiss-Prot:
sp|O82709|CALX_PEA, E-value = 2e-41

BLAST vs NONCODE:
NONZMAT001268, E-value = 4e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676366Echinochloa crusgalliSetaria viridis51.6639.995.51156forward
CNT30517641Echinochloa crusgalliJuglans regia45.3625.4685.4137forward
CNT30377662Echinochloa crusgalliArabidopsis thaliana44.0414.7185.71133forward
CNT30278532Echinochloa crusgalliChenopodium quinoa50.9914.0187.01154forward
CNT30629341Echinochloa crusgalliVigna unguiculata47.3513.183.92143forward
CNT30709122Echinochloa crusgalliGlycine max38.4132.9584.48116forward
CNT30164689Echinochloa crusgalliPistacia vera48.0126.3685.52145forward
CNT30190468Echinochloa crusgalliSecale cereale40.412.6296.72122forward
CNT30395817Echinochloa crusgalliTriticum turgidum40.415.7896.72122forward
CNT30561418Echinochloa crusgalliActinidia chinensis32.789.8286.8799forward
CNT30238817Echinochloa crusgalliBrassica oleracea44.0424.9587.22133forward
CNT30144554Echinochloa crusgalliMedicago truncatula42.3814.9584.38128forward
CNT30264134Echinochloa crusgalliBrassica rapa44.715.5785.93135forward
CNT30605054Echinochloa crusgalliGossypium raimondii39.420.9981.51119forward
CNT30686469Echinochloa crusgalliTriticum urartu91.3948.8592.03276forward
CNT30349705Echinochloa crusgalliEragrostis tef51.6622.2592.31156forward
CNT30366134Echinochloa crusgalliSorghum bicolor51.6624.7294.23156forward
CNT30120416Echinochloa crusgalliCitrus clementina67.2297.1386.7203forward
CNT3038556Echinochloa crusgalliCucumis melo36.4213.9287.27110forward
CNT30149228Echinochloa crusgalliBrachypodium distachyon51.6632.8490.38156forward
CNT30101562Echinochloa crusgalliOryza rufipogon22.527.8792.6568forward
CNT30116414Echinochloa crusgalliOryza nivara22.8524.6494.269forward
CNT30333676Echinochloa crusgalliCynara cardunculus28.1516.4784.7185forward
CNT30725707Echinochloa crusgalliLupinus angustifolius38.4121.0587.07116forward

Expression of CNT30585446

Peptides detected in this lncRNA

>peptide 1 (99 aa)
CQSGVRATCPCKQGSASLASSTRHIQVPLHTWGCQSSVPPIRHPPHHPSPQAHHPTIPQAWWLPHPQFPSVHPHPSPQASLHPDQGFWLSHPSPLASCHQ

>peptide 2 (99 aa)
VNQGCVPLALVSRVLLHWPLPLATSRCLFTLGVVNLRCLPFAILLIIPVLRLIIQPSLRLGGFLILNFHRCILIPVLRLHCIRIRDFGSLIPVLWLLVIR

Sequence

>CNT30585446
TGTCAATCAGGGGTGCGTGCCACTTGCCCTTGTAAGCAGGGTTCTGCTTCATTGGCCTCTTCCACTCGCCACATCCAGGTGCCTCTTCACACTTGGGGTT
GTCAATCTTCGGTGCCTCCCATTCGCCATCCTCCTCATCATCCCAGTCCTCAGGCTCATCATCCAACCATCCCTCAGGCTTGGTGGCTTCCTCATCCTCA
ATTTCCATCGGTGCATCCTCATCCCAGTCCTCAGGCTTCACTGCATCCGGATCAGGGATTTTGGCTCTCTCATCCCAGTCCTCTGGCTTCTTGTCATCAG
GG