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Detailed information on CNT30585439


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 5e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672589Echinochloa crusgalliSetaria viridis38.2330.2987.6242forward
CNT30521106Echinochloa crusgalliSetaria italica38.2333.3887.6242forward
CNT30727206Echinochloa crusgalliCorchorus capsularis20.385.684.5129forward
CNT30124778Echinochloa crusgalliPhyscomitrium patens19.1240.8884.3121forward
CNT30464658Echinochloa crusgalliSaccharum spontaneum29.8620.6182.54189forward
CNT306440Echinochloa crusgalliZea mays38.2320.2384.71242forward
CNT30649450Echinochloa crusgalliRosa chinensis20.3821.7985.27129forward
CNT30351770Echinochloa crusgalliEragrostis tef37.624.3984.45238forward
CNT30365460Echinochloa crusgalliSorghum bicolor37.7626.0983.68239forward
CNT30371468Echinochloa crusgalliOryza glumipatula37.620.6883.61238forward
CNT3038822Echinochloa crusgalliCucumis melo14.062089.8989forward
CNT30557165Echinochloa crusgalliPanicum hallii38.0755.7986.31241forward

Expression of CNT30585439

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MQAVFRHRRGSLLGVRGLVGDETDALRLPDVVESKDTDVATREGLLGLLELSQDLGGVGAAEHGQLPHGPVAAIVVTRGPGVLTVHEPDLAELEA

>peptide 2 (57 aa)
WNVICHITCHAILSRCYHAHGKSGDKYFVTFQFDIMTIWIIIDVCDDDVFVTNLWRF*

>peptide 3 (33 aa)
LERHLPHHMSCHSVTLLSCTWQIWRQILCDISV*

>peptide 4 (29 aa)
LGTSSATSHVMPFCHAVIMHMANLETNTL*

>peptide 5 (29 aa)
MFVTMMCLSLTYGVFKVFRHRRCLDRDLL*

Sequence

>CNT30585439
CTTGGAACGTCATCTGCCACATCACATGTCATGCCATTCTGTCACGCTGTTATCATGCACATGGCAAATCTGGAGACAAATACTTTGTGACATTTCAGTT
TGATATTATGACTATTTGGATCATCATAGATGTTTGTGACGATGATGTGTTTGTCACTAACTTATGGCGTTTTTAAAGTGTTTCGTCACAGAAGGTGCTT
AGACAGGGACCTTCTATGACGATGGCATTTTTGTCATGGAGACGTCATAATTCACACAATGTGACAAAACCATATCACAGAAGATAACATGTCTTGTAGT
GAGGCGACCCCAAGCAAAAACCCAACAAACACTTCATGGTTTGCTCATGCAGGCTGTGTTTAGGCACCGCCGCGGCAGTCTACTCGGAGTTCGGGGGCTT
GTAGGCGATGAAACTGACGCACTGCGTCTGCCTGATGTTGTCGAATCCAAGGACACGGATGTAGCAACCAGGGAAGGTCTTCTTGGCCTCCTCGAGCTCA
GCCAAGACCTGGGCGGCGTCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGGCCATCGTAGTAACAAGGGGACCTGGAGTTCTCACGGT
ACACGAACCCGATCTTGCTGAACTCGAGGCAGG