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Detailed information on CNT3058538


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 2e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673835Amborella trichopodaSetaria viridis6.8621.1486.4974forward
CNT30376827Amborella trichopodaArabidopsis thaliana5.472589.8359forward
CNT30380328Amborella trichopodaManihot esculenta6.326.0588.2468forward
CNT30628401Amborella trichopodaVigna unguiculata8.2526.4985.3989forward
CNT30196405Amborella trichopodaPisum sativum9.8240.9386.79106forward
CNT30186142Amborella trichopodaSecale cereale7.3230.9884.8179forward
CNT30221452Amborella trichopodaHordeum vulgare11.5820.4683.2125forward
CNT30591253Amborella trichopodaMusa acuminata7.9727.5687.2186forward
CNT30254957Amborella trichopodaAvena sativa6.8630.5887.8474forward
CNT30133877Amborella trichopodaLolium perenne6.8634.7486.4974forward
CNT30686633Amborella trichopodaTriticum urartu6.0223.4786.1565reverse complement
CNT30596369Amborella trichopodaOryza meridionalis6.8626.5285.1474forward

Expression of CNT3058538

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MTINYKNTKRRAYLYIHLSIQSNFNPQKVHCLKFLPYPKLKIKTEG*

>peptide 2 (45 aa)
MNGAKVSILKEPNQISLSSFLTPPVVGADFLAACRTKYINNKAQI*

>peptide 3 (36 aa)
MHQERNFNEYSSTNIKTSKREITTNKPLTRKLQNKQ*

Sequence

>CNT3058538
GTATAGGCCTCCGACAACTTTGTTAACTTCAATTTTATAACAACAATAAACTAATACATTTGAGAACACCACACACCATATCAACCATCAGAAATAAACT
TATGAATAAGAAATACATCCAAATAAACCAATAAACTATAAGAGATTGAAAAAGTATAACATCACAAAATCCAAATAAGAAAGATTTACCGCATACAGGT
GCGTTCAGTCTAAATCAAAAAGAGAAAGCAACTACCAGATACAAGTTCTTTCCCCACAGAGTTTGTGGTTCGAAGGCATGACCATCAATTACAAAAACAC
CAAGAGAAGGGCCTATCTATATATACACCTTTCAATCCAATCTAACTTTAACCCCCAAAAGGTCCATTGCCTAAAGTTCCTTCCATATCCAAAATTAAAA
ATAAAAACTGAAGGGTGAGGAGTCAAATTAGAGAGGAGAGAACCTAAGCCCGCTCCCCACGAATACGCCTAGCAAGCTGGATATCCTTGGGCATGATGGT
TACTCTCTTGGCATGAATGGCGCAAAGGTTAGTATCCTCAAAGAGCCCAACCAGATAAGCCTCAGCAGCTTCTTGACACCACCTGTTGTTGGAGCGGACT
TTCTTGCAGCCTGTAGAACAAAATATATCAACAACAAAGCTCAGATATAAACTCTATTCAATATTGAACGCCTCAGAAGGTGTAAAGAATTTTCACCATG
CATCAAGAGAGAAACTTCAATGAGTACTCTTCCACAAACATTAAAACATCTAAAAGAGAAATCACAACCAACAAACCCCTAACGAGGAAACTTCAAAATA
AACAATAAAACCCAAAAATGGATCCGAAAACAAAAATATTCAAATAATTGACGAATATATTAGAAAACAAAAATGACAATTCGTGGACAACAAAGCGAAC
GATTGTCTACTGCTGAATATGAAACTCACCCCTGTGATTTAGAATAAGGTTTCCAAAATCATAATATCTAATTACTTCTAGCCAAGAACCTCCCTGTGAC
TGAACCCCAGGAACGATAATTAATCTTGGAAAGCCCAGAACCCAAATGCTTAGTATATGTCACAACAAATTAGGAGAGA