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Detailed information on CNT30584731


BLAST search results

BLAST vs Swiss-Prot:
sp|P31924|SUS1_ORYSJ, E-value = 1e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677855Echinochloa crusgalliSetaria viridis11.9732.0382.93164reverse complement
CNT30445673Echinochloa crusgalliSaccharum spontaneum8.3242.784.21114reverse complement

Expression of CNT30584731

Peptides detected in this lncRNA

>peptide 1 (42 aa)
CRMTTLSSDVSNCIVTSSLKSSVWKEVGCFLMQFFLQKRSKC*

>peptide 2 (41 aa)
MLSRRNISAFFVLLGSAKIVVLSKCNIFLQFEEAIFLYGNI*

>peptide 3 (40 aa)
MSYFHSETTKMPMALSSVYWFCKYMCNSERRGTRRFLEML*

>peptide 4 (39 aa)
MDGLVKFLHECLSFFLNVVQKEYICFFCSLGVCKNCCPV*

>peptide 5 (38 aa)
MVTQVQKTGFCSFLTTITTSILGLWPRCLSVVGDKQGR*

>peptide 6 (35 aa)
MWSSSRTASRTQACGARSSRVGFSLCKSIFLKAMF*

>peptide 7 (34 aa)
MDICWLTFVVLINIDLNTDQEGVEEKETARENGT*

Sequence

>CNT30584731
TGTAGAATGACAACTTTAAGCTCTGATGTATCTAATTGTATAGTTACTTCATCATTAAAGTCATCTGTGTGGAAGGAAGTTGGATGTTTTTTAATGCAGT
TTTTTCTCCAAAAAAGGTCTAAATGCTGACCAATTAATTGTATCTCATATGTGCAAGAATGGATGGATTAGTGAAGTTTTTACATGAGTGTTTAAGTTTT
TTTTTAAATGTTGTCCAGAAGGAATATATCTGCTTTTTTTGTTCTCTTGGGGTCTGCAAAAATTGTTGTCCTGTCTAAGTGCAACATCTTTCTTCAATTT
GAGGAGGCAATATTCCTTTATGGAAATATCTAATTATGGATATTTGTTGGCTAACTTTTGTGGTGCTCATCAACATTGATCTGAATACAGATCAGGAAGG
AGTAGAAGAAAAAGAAACAGCAAGGGAGAATGGGACATAACAAGGGGAGGAAAAGAAGGGCATAATTGTTAAGAGTTGGACTCTACTCATCGAGTGTTCA
GATTTGGAGGATGGTGACTCAGGTCCAAAAAACTGGCTTTTGTTCTTTCCTGACTACAATCACGACATCTATATTAGGATTGTGGCCGCGATGTCTTTCT
GTCGTTGGTGACAAACAAGGGAGATAGCCTGTTTGTTGTGACCTTGTCTGGAACATTGTACTTTTGCAGAGTAGGGACTTACATCTCCATAAAGTCTTCA
TTATGATTTGGAGAAAGTACTGCCACCCAAATGTCTGTACTCTGACTTTTTTTATATGTACAAGATAATGCATTAGTAAAACGTGCAAGACTTAATTGTT
TAGGTGCCCAACACGAGATAATTATGGATTAACCAAAAGAGTGTGGATACTTTGGCTGAAATGAAGGCATGTAACATGTTGTGTCATTATATGGATACTT
TCAAAGTTATTGGTCGTGTCAGACTGATTTCCTTGAAGTAACAGAGATGTAGCTATGTATAGAGATGTAACTGGTATGCAATAGAAGTTTATTTTAGAGC
TTGTAATCTTTGACAGTTGGAATATTTGGTTCCAAAGGAATAGGTGCGTCTCTGATGTGGAGTTCTTCGAGAACTGCAAGCAGGACTCAAGCCTGTGGAG
CAAGATCCAGCAGGGTGGGCTTTAGCCTATGCAAGTCAATTTTTCTCAAGGCAATGTTCTGATGCACTGATGTCTTATTTCCACTCGGAGACGACGAAGA
TGCCGATGGCCCTGTCCAGCGTGTACTGGTTCTGCAAGTACATGTGCAACTCAGAGAGGCGTGGGACCCGGCGGTTCCTGGAGATGCTGTAACTGTAAGC
ACTCAAGTACTGCTCCATGGCCATCACCGTGCCGTTGGCCGCGGAGGGAGAACCCTCCAGCAAGTGATCC