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Detailed information on CNT30584364


BLAST search results

BLAST vs Swiss-Prot:
sp|P24805|TSJT1_TOBAC, E-value = 1e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639343Echinochloa crusgalliNymphaea colorata19.3632.3385.5797forward
CNT30179357Echinochloa crusgalliSecale cereale26.5513.7191.73133forward
CNT30680899Echinochloa crusgalliTriticum urartu19.9625.2589100forward
CNT30720672Echinochloa crusgalliTriticum spelta25.5524.2991.41128forward
CNT30349408Echinochloa crusgalliEragrostis tef48.522.0590.95243forward
CNT30596159Echinochloa crusgalliOryza meridionalis21.9626.8989.09110forward
CNT30558323Echinochloa crusgalliPanicum hallii40.5236.6495.57203forward

Expression of CNT30584364

Peptides detected in this lncRNA

>peptide 1 (36 aa)
RLIAYMYTYKYTVPGRRRRRRTCCRRRRRRRIRRGP*

>peptide 2 (31 aa)
MTRSASLVDLLQRPYWRMRPLRLSSRPRKTQ*

>peptide 3 (78 aa)
MSSRPQNILPEAASAGCAAWKSRRISSGFLGLVAPLLGLLSSCGACATCFWKMASILARSNQSTNDNKLKENRADRAAA

Sequence

>CNT30584364
TTCGCTTGATTGCATATATGTATACATATAAATATACCGTACCAGGGCGGCGAAGACGGCGCCGGACTTGTTGTCGAAGACGACGAAGGCGAAGGATCCG
ACGAGGTCCTTGACGACCTGGTCGGCGGGGTAGGGGCCGCGGTCGCGGAGGGTGCGGTAGGCCTCGATGACGAGGAGCGCCTCGTTGGTGGACTTGTTGC
AGAGGCCGTACTGGCGGATGAGGCCGCTGAGGTTGTCGAGCCGGCCCAGGAAGACGCAGTAGATGTCGTCGAGGCCGCAGAACATCCTGCCGGAGGCGGC
GTCGGCGGGGTGCGCGGCGTGGAAGTCCCGTAGGATCTCGTCGGGGTTCCTGGGCTTGGTGGCGCCGCTCCTCGGGCTGTTGAGCTCCTGCGGCGCGTGC
GCCACCTGCTTCTGGAAGATGGCCAGCATCCTCGCTCGCTCGAATCAATCAACCAATGATAACAAGCTCAAAGAGAATAGAGCCGATCGAGCCGCTGCGG
C