« Back to Echinochloa crusgalli search


Detailed information on CNT30583976


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96288|BBX24_ARATH, E-value = 9e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691178Echinochloa crusgalliOryza sativa37.5425.9898.23113forward
CNT30283705Echinochloa crusgalliTriticum aestivum20.934.587.363forward

Expression of CNT30583976

Peptides detected in this lncRNA

>peptide 1 (93 aa)
LPCRRARSRRTGGGRRRPSSAAGTAAARAPAAPGRTRRAAAAAAAARRWRRRRRGRRGCRWPGSAGGCRRACRGRGWARRSPGRRAPGPPRRR*

>peptide 2 (98 aa)
CLVGGLVVGELEEVVDGPALRQELRRRGHLLRRGGHGGLRRRRRRRDVGGGGGEADADAGGQVALVVAGERAGDVDGLVAVPAEERPVLHAEDERRLLL

Sequence

>CNT30583976
CTTGCCTTGTCGGCGGGCTCGTAGTCGGAGAACTGGAGGAGGTCGTCGACGGCCCAGCTCTGCGGCAGGAACTGCGGCGGCGAGGGCACCTGCTGCGCCG
GGGCGGACACGGCGGGCTGCGGCGGCGGCGGCGGCGGCGCGACGTTGGCGGAGGCGGAGGCGAGGCCGACGCGGATGCCGGTGGCCAGGTAGCGCTGGTG
GTTGCCGGAGAGCGTGCCGGGGACGTGGATGGGCTCGTCGCAGTCCCGGCAGAAGAGCGCCCGGTCCTCCACGCAGAAGATGAACGCCGCCTTCTCCTGC
G