Detailed information on CNT30583886


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 7e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30658229Echinochloa crusgalliTriticum dicoccoides68.4655.5485.62612forward
CNT30681086Echinochloa crusgalliTriticum urartu55.0355.0384.15492forward
CNT30621504Echinochloa crusgalliCajanus cajan24.3813.8380.28218forward

Expression of CNT30583886

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LGTWTSSLLCVKKHCMRRIYTQGANLSTYLYAY*

>peptide 2 (64 aa)
MTSPVSGLLLVTLNVMLPVDDAAFLMFSFRSSSSSPLPPAGSATALSYPVEPPRPLGSRKEEPR*

>peptide 3 (65 aa)
WNLDIKSAVCKEALHAKNIYTGRKFKHILIRVLDSRPLSSILSKCKAGNINTWEFMRTHERRNAY*

>peptide 4 (70 aa)
MSLVFWNSGGAFLAMPSALTVKDVGSRQNFFIWYLPALNGNDSTPPSMVGHWFAVPVPFTSMYVLLWISS*

>peptide 5 (80 aa)
MGVHENTRKKKCILKIKDQQPVFALVDIQCLSFSIVHFPIDHGRTSKTRAARTRPPGSSRPWAPWPQGQCPTAAHSRTRR*

Sequence

>CNT30583886
CTTGGAACTTGGACATCAAGTCTGCTGTGTGTAAAGAAGCACTGCATGCGAAGAATATATACACAGGGCGCAAATTTAAGCACATACTTATACGCGTACT
AGACAGCCGTCCTCTCTCCTCGATCTTGTCCAAATGCAAAGCAGGCAATATTAATACATGGGAGTTCATGAGAACACACGAAAGAAGAAATGCATACTAA
AAATTAAAGACCAACAGCCCGTATTTGCATTAGTAGATATACAATGCCTCAGTTTTTCCATCGTACACTTCCCCATCGATCACGGACGGACGTCTAAGAC
TCGAGCTGCGCGTACCAGACCCCCTGGATCTTCACGTCCTTGGGCGCCTTGGCCCCAAGGTCAGTGTCCGACGGCTGCACACTCTCGAACACGCCGATGA
CCTCGCCGGTCTCCGGGTTGCTCTTGGTGACGCTCAACGTGATGTTGCCCGTGGACGACGCGGCGTTCTTGATGTTCTCCTTCAGGAGCTCCTCCTCATC
TCCCCTGCCTCCGGCGGGGAGCGCGACGGCGTTGTCGTACCCGGTGGAGCCACCACGGCCCTTGGGGTCGAGGAAGGAGGAGCCACGGTAGCTGGGCACG
AGGAATGGCCCGCCGAAGCTGTCCGGCTTGCCGGTGAGGCGGGTCATGAGCTTGGTCTTCTGGAACTCGGGCGGCGCGTTCTTGGCGATGCCCTCCGCCT
TGACGGTGAAGGACGTCGGCTCCAGGCAGAACTTCTTCATCTGGTACTTGCCGGCCTTGAACGGGAACGACTCCACGCCGCCGTCGATGGTCGGGCACTG
GTTCGCCGTGCCGGTTCCCTTCACCTCCATGTACGTCTTGCTCTGGATCTCGTCGTAGGTCAGCCTCTTCGGCGTCCCCTCCGCGCTTGCCCCC