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Detailed information on CNT3058384


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01667|CAB6_ARATH, E-value = 8e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674046Amborella trichopodaSetaria viridis23.0618.4985.45110forward
CNT30515355Amborella trichopodaJuglans regia43.8233.9879.9209forward
CNT30525458Amborella trichopodaPhaseolus vulgaris39.4110.3681.91188forward
CNT30629575Amborella trichopodaVigna unguiculata29.3534.1582.14140forward
CNT30400439Amborella trichopodaTriticum turgidum14.2625.6688.2468forward
CNT30567058Amborella trichopodaActinidia chinensis26.2134.7283.2125forward
CNT30588696Amborella trichopodaMusa acuminata28.0949.8187.31134forward
CNT30236705Amborella trichopodaBrassica oleracea22.4322.7285.98107forward
CNT30256504Amborella trichopodaAvena sativa33.9637.6782.72162forward
CNT307903Amborella trichopodaZea mays39.8349.4881.05190forward
CNT30609040Amborella trichopodaGossypium raimondii40.2541.7481.77192forward
CNT30344605Amborella trichopodaEragrostis tef28.0960.9184.33134forward
CNT3034379Amborella trichopodaTheobroma cacao30.8218.8581.63147forward
CNT30102128Amborella trichopodaOryza rufipogon32.9127.1284.08157forward
CNT30576871Amborella trichopodaOryza barthii32.9118.2684.08157forward
CNT30580151Amborella trichopodaEchinochloa crusgalli36.933.484.66176forward
CNT30497042Amborella trichopodaDigitaria exilis43.1925.9182.52206forward
CNT30551236Amborella trichopodaOryza brachyantha34.816.6883.13166forward

Expression of CNT3058384

Peptides detected in this lncRNA

>peptide 1 (90 aa)
LGVAKGVKSSSGVLLLLGVLLHAPLVLDKSDGQELYDKYGGEGAPWHRVPKVGGLPSWGGSPLLGFDPVLRYLTQTKWGGAGQASIQQTW*

>peptide 2 (36 aa)
PWSSQGGQKLLRGTSSSRGPSPCSSGARQKRWTRTL*

>peptide 3 (33 aa)
MVKREEDELREGKERDGVNADLVEDNTDGMAAN*

>peptide 4 (37 aa)
MPTWWKITLMAWLPIDNIFLDSPSLSTNSTVMADAEI*

>peptide 5 (30 aa)
MLLWCSTKAMDKNSMTSMVGRVPHGTGFPR*

Sequence

>CNT3058384
CCTTGGAGTAGCCAAGGGGGTCAAAAGCTCCTCCGGGGTACTTCTTCTTCTCGGGGTCCTTCTCCATGCTCCTCTGGTGCTCGACAAAAGCGATGGACAA
GAACTCTATGACAAGTATGGTGGGGAGGGTGCCCCATGGCACAGGGTTCCCAAGGTAGGTGGCCTGCCCTCCTGGGGTGGCAGCCCACTCCTGGGCTTTG
ACCCAGTTCTCCGGTACCTCACCCAGACCAAGTGGGGCGGGGCTGGCCAGGCATCCATTCAGCAGACATGGTGAAGCGAGAGGAGGATGAATTGAGAGAG
GGGAAGGAGAGAGATGGGGTGAATGCCGACTTGGTGGAAGATAACACTGATGGCATGGCTGCCAATTGACAACATCTTCCTAGACTCGCCATCTCTCTCT
ACCAACTCAACTGTGATGGCTGATGCTGAGATCTGAAGCAGTAGCAGTAGCAGTAGCAGTGGAATGGAAAAAGAAGA