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Detailed information on CNT30583813


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184327Echinochloa crusgalliSecale cereale18.1828.1791.6760forward
CNT30253313Echinochloa crusgalliAvena sativa201.4989.3966forward
CNT30139217Echinochloa crusgalliLolium perenne22.732.988875forward
CNT308742Echinochloa crusgalliZea mays25.452.5591.6784forward
CNT30495872Echinochloa crusgalliDigitaria exilis33.946.6893.75112forward
CNT30556231Echinochloa crusgalliPanicum hallii23.943.7393.6779forward

Expression of CNT30583813

Peptides detected in this lncRNA

>peptide 1 (45 aa)
LLLIGWDGWNSRRIPSHWRIACGGTKHEAGTALLARKSQVRYQSL*

>peptide 2 (40 aa)
ACCSLAGTDGTRGGFQAIGALHVAAPSMRQELHYLQGSHK*

Sequence

>CNT30583813
GCCTGTTGCTCATTGGCTGGGACGGATGGAACTCGCGGAGGATTCCAAGCCATTGGCGCATTGCATGTGGCGGCACCAAGCATGAGGCAGGAACTGCATT
ACTTGCAAGGAAGTCACAAGTAAGATACCAAAGCTTGTAGTCATTTAAGGTGTATTAGTGCTGCCTTATTGGTTTCTTCAACATATTGTCCCACAAACGA
CACTTTCTAGCTTGTACGGAGTACTACCTAGAGTGCTGGTCCTGCGATTTATCTTTATGGGCCTGGATTTCACCATCATGGGCCTTTCTCCTCCTATGTA
CATCTCAAGATTTGTACCCCTCAAAAAAAA