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Detailed information on CNT30583753


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524100Echinochloa crusgalliSetaria italica28.9725.7192.59135forward
CNT30459528Echinochloa crusgalliSaccharum spontaneum33.4833.2696.79156forward
CNT3067337Echinochloa crusgalliLeersia perrieri17.1725.0896.2580forward
CNT30116481Echinochloa crusgalliOryza nivara25.3219.8396.61118forward

Expression of CNT30583753

Peptides detected in this lncRNA

>peptide 1 (58 aa)
GGRSRAPRCRRRCRRRRRRGRRGCRWRGSAGGCRRACRARGWARRSPGRRAPGPPRRR*

>peptide 2 (34 aa)
MGSSQSRQKSARSSTQKMNAAFSCASTRTCKAGS*

>peptide 3 (70 aa)
VVGVVRRVAGGAAGGGGGEADADAGGEVALVVAGERAGHVDGLVAVPAEERPVLHAEDERRLLLREHTHV*

Sequence

>CNT30583753
TGGTGGTCGGAGTCGTGCGCCGCGTTGCAGGCGGCGCTGCAGGCGGAGGCGGAGGCGAGGCCGACGCGGATGCCGGTGGCGAGGTAGCGCTGGTGGTTGC
CGGAGAGCGTGCCGGGCACGTGGATGGGCTCGTCGCAGTCCCGGCAGAAGAGCGCCCGGTCCTCCACGCAGAAGATGAACGCCGCCTTCTCCTGCGCGAG
CACACGCACGTGTAAGGCAGGTAGCTAGCATAGCATAGCAAAGCGGTGGCCGTGGCCGGCGACGGTGGCGTACCTGGCAGACGTCGCAGCGGGGGAGCTT
TGCCGAGAGCGCCTCGAGCGGGAGGCGCTGGTGCTTGCTGGCGAGCTTGTTGGCGGCGTGGATCTCGACGTCGCAGCGCGCGCACAGCGCCGCCTCGTCG
GCGCAGCACACCACCGTCGCCGCCGCGCTCTCGCACGCGTCGCACTGGATCTTCATCGCCGCAGCC