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Detailed information on CNT30583679


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3012019Echinochloa crusgalliZea mays6.3620.5695.4544reverse complement

Expression of CNT30583679

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MMLSCSTGIGLMKPLLYVPLLSFNIIMTRSPLLIGTWSDHPGKQCNHKCYVALALTD*

>peptide 2 (37 aa)
MHFNYTVYFSLALILLGPIKDFLVCFTVPCSWVIKLI*

>peptide 3 (35 aa)
NTPFEEVFEEPAVEEFEQQQGWEEGKYSLIMPVCT*

>peptide 4 (29 aa)
ETRRSRKCLKNQLLKSLSSSRVGKKASIP*

Sequence

>CNT30583679
GAAACACGCCGTTCGAGGAAGTGTTTGAAGAACCAGCTGTTGAAGAGTTTGAGCAGCAGCAGGGTTGGGAAGAAGGCAAGTATTCCTTGATCATGCCCGT
TTGTACCTAAATGACATGCATTTTAATTACACCGTTTATTTCTCGCTTGCATTAATATTGCTGGGTCCCATTAAGGATTTCCTAGTCTGTTTTACCGTAC
CTTGCAGCTGGGTCATTAAATTAATTTGACTGGTAGATGATGCTTAGTTGCTCAACTGGGATTGGTCTAATGAAACCCCTACTCTATGTTCCATTATTAT
CTTTTAATATAATAATGACAAGATCACCTCTTTTAATTGGAACATGGAGCGACCACCCAGGAAAACAGTGCAACCATAAGTGCTATGTGGCTCTGGCTTT
GACTGACTAATTAGGTATTCTGGTTTGGGATAGTTTTACCCGAAAGGGGCAAGAGGTGCGGCGGTTGACGAGGTATAGCCCGGTCCTCTTGAGCGGTAGG
CTTTGCTAAGATACGCGACTCACTAGGGAGGGTTATGCTTTGCTCCTGAACCGGAAGCCTTAGCGAACTATCACTTATTAGAGTATCTTTGTAAAGGTCT
CATAGTGAAACCCAGTATTCGGTCCACGTGGTGTGGGAAGGATACATGCTTTCGGGCAATGGGAATCACGGCTTATGGTGAATGTGTACAAC