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Detailed information on CNT30583665


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71V89|H33_GOSHI, E-value = 2e-55

BLAST vs NONCODE:
NONBRAT001321, E-value = 3e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30686633Echinochloa crusgalliTriticum urartu7.5524.1910067reverse complement
CNT30723061Echinochloa crusgalliTriticum spelta30.3345.5994.05269forward
CNT30596421Echinochloa crusgalliOryza meridionalis16.3520.6694.48145forward
CNT30148402Echinochloa crusgalliBrachypodium distachyon15.2227.4995.56135forward
CNT3099660Echinochloa crusgalliOryza rufipogon25.2549.4589.73224forward

Expression of CNT30583665

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MGLLFFFRRKRTLVASCLRGAFPPVDLRAVCFVRAISSFFFSATSSSSLFPARRIWGRRRPSKRLVR

>peptide 2 (78 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKSASTAWLWNRRSVLKSCAISRTRRWNGSLRIRSSVLFWYLRISRSATVPGL*

>peptide 3 (67 aa)
MAWVSFFSLDGNEPWWRAACEGPSLRWTCGRSASYGPSLPSSSRRLPPLAFFLRGGFGGEGGQASVWC

Sequence

>CNT30583665
TTTGACAAGCTTGCTTCATCCCGAAGCAAAGCCAAAATAGCAGCAGATTACAAAATAGACTTGTAAACCTGTTTTTACAATAACCAAACAGATACCGACA
ACTAATACAGCTAATCCAGATCCACTAAACGCGGAGGGCGGGAGGAGAATCAACAAGCCGGCTCCATCTTGACCTCCTCCCTCCTCCTCACGGCTTCAAC
TGCGGCGGCGGCGCCGGCGGCTTACGCACGCTCGCCGCGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCG
CAGAGGTTGGTGTCCTCGAAGAGCGCCAGCACGGCGTGGCTCTGGAACCGGAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGGACCAGGCGCTGGAACG
GGAGCTTGCGGATCAGGAGCTCCGTGCTCTTCTGGTACTTGCGGATCTCGCGGAGCGCCACCGTGCCCGGCCTGTAGCGGTGGGGCTTCTTCACTCCGCC
GGTCGTCGGCGCCGACTTCCTCGCCGCCTGCAAATCAATCGCAACCGCGCATCAGCAAACCTAAATCTCGGCGAGAACGGAGCAGATCGGAACGGAAGGA
AACGCGAGGAATAGGTGAAATAGCTTTGGAAAGGCAGGATCTGCTGATGAAAGTGGGCCGGAGCCAGAAGATTTGAAAATCATGGCATGGGTCTCCTTTT
TTTCTTTAGACGGAAACGAACCTTGGTGGCGAGCTGCTTGCGAGGGGCCTTCCCTCCGGTGGACTTGCGGGCGGTCTGCTTCGTACGGGCCATCTCTTCC
TTCTTCTTCTCGGCGACTTCCTCCTCTAGCCTTTTTCCTGCGCGGCGGATTTGGGGGCGAAGGCGGCCAAGCAAGCGTCTGGTGCGG