Detailed information on CNT30583280


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 2e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692625Echinochloa crusgalliOryza sativa2.7422.429050forward
CNT30229217Echinochloa crusgalliAnanas comosus2.7921.3490.251forward

Expression of CNT30583280

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MGCARGPRSDAARPRCRCCSRNCAWICWICAGPRWLSASPSAASTDDVGYGAAGDAYDDDEEHGGRGGSCEKEVAVGAGGGGGSAV*

>peptide 2 (57 aa)
MNNLNTTVVLLHDQIDKLDLKPSLITATSTLSSLNPTCSHGGRCLIFHRIRRRLRIN*

>peptide 3 (43 aa)
QNSNSEVTNSYIINTYTLNWPLPGEKKQPAKQPGDHYIQDTNE*

>peptide 4 (41 aa)
TKFKFRSNQQLHNKHLHPQLAFAGREKTTGEATRRSLHTGH*

>peptide 5 (40 aa)
MESQSISHDGYLLRCRAAAADSSHGASVKSRLAISGSGVA*

>peptide 6 (37 aa)
MSSWSEEDDEEELSWFVYKSMAAITKMSRTLGRAKIK*

Sequence

>CNT30583280
ACAAAATTCAAATTCAGAAGTAACCAACAGTTACATAATAAACACTTACACCCTCAACTGGCCTTTGCCGGGAGAGAAAAAACAACCGGCGAAGCAACCA
GGAGATCACTACATACAGGACACTAATGAATAATCTTAATACAACAGTTGTACTACTCCATGACCAAATAGACAAGCTTGACCTTAAACCCTCCTTAATC
ACCGCTACGTCGACTCTGAGCTCCTTAAACCCTACTTGCAGCCACGGCGGCCGATGTCTAATATTCCATCGGATCCGCCGCCGGCTGCGGATTAATTAAT
GAAATGCATTGACAAAAATTACAGCTCGTGATTGATCGAGCATCTGCTTGTTGGCTTGATCACGAGAGGATGGAGTCCCAGTCGATCTCCCATGACGGGT
ACTTGTTGAGGTGCAGGGCGGCGGCAGCGGACTCGTCCCACGGCGCCTCCGTGAAGTCCAGGCTCGCCATCTCCGGCAGCGGCGTCGCCTGATGGTGTTC
TTGCTGCGTGAACGCCGAGAGGGAAGGAGGCGCGCCGCGTCGCCGCGGAGGCGGAAGGCCGCCTTGTCGTAGGCGAGCGCGGCGTCCTCGGCGGAGTCGA
AGGTGCCGAGCCACAGCCGCGTCCGGTTCCTGGGCAGGCGGATCTCCGCCACCCACTTGCCCCAGTGCCGCTGCCGCACGCCGCGGTACAGCTTGGCGGC
GGCGGACGGCGGCGCCGCCCCGGCCTGCTTCATGGGCTGCGCCCGCGGGCCGAGGAGCGACGCCGCCAGGCCCCGCTGCCGCTGCTGCAGCAGGAACTGC
GCCTGGATCTGCTGGATTTGCGCCGGGCCCAGGTGGTTGAGCGCCAGCCCCTCCGCGGCGTCCACCGACGACGTCGGGTACGGCGCCGCCGGCGACGCGT
ACGACGACGACGAGGAGCACGGCGGCAGAGGCGGGAGCTGCGAGAAGGAGGTGGCGGTGGGAGCGGGCGGCGGTGGCGGGAGCGCGGTGTAAGAGGAGGC
GGTTGCAGGGTAGTAGTACGAATCTTGAGGCAAAGCAGAGGGGTAGGGGTAGGAGTAGGAGAAGGGGGAGGAAGCACTCCGGATAAAAGGTTCGAGTGCT
TTCATGAGCTCCTGGTCCGAGGAGGACGACGAGGAGGAGCTCAGCTGGTTTGTGTACAAATCTATGGCTGCCATTACGAAGATGAGCAGAACACTAGGAA
GAGCTAAAATCAAGTGAAAAAAAACTGACCTTTTTTTGTTCCAAAAACTGAAAGAGAGCTAACTGAAAAAGAAATTTGAAAAAAGGGGGCCTGTTTCTTC
TGTAAAAGCGAAGAACAGGGATGGTTGGTGTGGTTGGTGCAGCCTGAAAGGGGGCTTAAAAACAACCCTTTTCCGGCTTGCTTGCTAGACGAAAGAAACA
AAACAGAAAGAAACCAAGAAAGTTCTACAAGAACAGACGGGAATCAATCCAGGAGAGAAAAAAGGTTCTCCGGATATCTGTTCTTCCCTACTGCCAGGAA
GAGGAACACGAACAGATTGAAACAAAGCTCCAGCCTTCTCCGGTCACGCTTCCTTGCTAGCTCGATCAAATAGCACGCACCAGCAAGAAAGGCTTCCGGA
GAAGGCCTCCTTTTCCTAGCTTCTACAAGAAGGGTTCAGAGAACAAACCTGTCGCCACCGTGTCCGCGGTGGCTCGCCGTCGTTGTCGTCGTTGCGCTCA
GCCTCACCGGGGAAGTGGAGTGGGTTCTGGGTTGGGTTGCTGGGGAGGGGATGATGGGGAAGAGGGAGGAGAAGGGATGGGAAGGCTTGTGCGTGTGGGT
GTGGGTGGTGGGGGCGGATGCGTCTCTC