Detailed information on CNT30583270


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000319, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30588049Echinochloa crusgalliMusa acuminata73.4377.3294.011653forward
CNT30365083Echinochloa crusgalliSorghum bicolor57.4971.2696.291294forward

Expression of CNT30583270

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MEQCRQGKSAKRIRNFGKRIGSEGWARGSRPRTRRLPVDCSSCSRGERGPPRAGRGTDRERFFRGPSPGVEQPTQNWYGQGESDCLIKTKHCDGPCGC*

>peptide 2 (60 aa)
MPRHLISDAHEWINEIPSVPVYYPAKPQPRERAWRNQRGKKTLLSLTLVRLCRNDLRGVG*

>peptide 3 (34 aa)
MNGLTRFPVSLSTIQRNHSQGNGLGGISGERRPC*

>peptide 4 (36 aa)
MGKPILRDGVTPADSAISRVARKGIGLRFPEPGRGG*

>peptide 5 (32 aa)
MKIRRTEYRPRPVVLITASGLQGEQPLANGTM*

>peptide 6 (40 aa)
MNRKPGYGAELRANLEPTKGVGRLRQQDGGHGSRNPLRSV*

>peptide 7 (51 aa)
ATLIFYEGFELEHACRDPKDGELCLSGAKPEETLVEARSDTDVQIVRLTWV*

Sequence

>CNT30583270
GGCGACCCTGATCTTCTATGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACT
CTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCG
AAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCAGGTAAATCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAAC
TTTAAATAGGTAGGACGGCACGGCTGCTTCGGTGAGCCGTGCCATGGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGA
TGAACCGGAAGCCGGGTTACGGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCG
AAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTAAAGCGCGCGACCCACACCCGGCCATCTGGGCGA
GCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGCTGCAAAACCCGGGGCGCGAGCCTGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAG
CAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACCC
CGGCAGACAGCGCGATTTCGCGTGTTGCCCGAAAGGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAG
ACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCTGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGTCGGAAGAGC
ACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCATGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGT
CTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGTTGG
GCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCCGGTGGACTGCTCGAGCTGCTCCCGTGGCGAAAGAGGGCCGCCGCGTGCCGGCCGGGGGACGGACC
GGGAACGGTTCTTTCGGGGGCCTTCCCCGGGCGTCGAACAACCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTG
CGATGGTCCCTGCGGATGCTAACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAA
CTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCAGTGTCCCTGTCTACTATCCAGCGA
AACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTAGAAATGACCTGAGAGGTGT
AGGATAAGTGGGAGCCTCCGGGCGCAAGTGAAATACCACTACTTTTAACATTATTTTACTTATTCCGTGGGTCGGAAGCGGGGCATTGCCCCTCTTTTTG
GCTCCAAGGCCTGGCTTTGCTGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAATGCAGGTGT
CCTAAGATGAGATCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGT
GGCCTATCGATCCTTTAGATCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGAC
GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
TTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGG