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Detailed information on CNT3058323


BLAST search results

BLAST vs Swiss-Prot:
sp|P61241|YCF2_AMBTC, E-value = 1e-123

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532211Amborella trichopodaEucalyptus grandis35.9452.0788.53340reverse complement
CNT30195107Amborella trichopodaPisum sativum10.6823.2788.12101forward
CNT30711602Amborella trichopodaGlycine max17.3460.5287.2164forward
CNT3085348Amborella trichopodaVigna radiata22.4185.4883.96212forward
CNT30239222Amborella trichopodaBrassica oleracea28.8648.483.88273forward
CNT30218750Amborella trichopodaKalanchoe fedtschenkoi22.8318.5680.56216forward

Expression of CNT3058323

Peptides detected in this lncRNA

>peptide 1 (34 aa)
VSKRMKFRYLYPIEVRNHGIYVWNRFHFEIFEKR*

>peptide 2 (48 aa)
MAYMFGTDSILRYLKNVESICHFSTHLFRQRFHFFLFPDGKYFSKHGV*

>peptide 3 (36 aa)
MNSYERVSRDSANYLDRGISLRNRNLCFQRISVDYS*

>peptide 4 (86 aa)
MNMSYTCDSIGEGEIASLSKKTCFFYQRKYLVANERDIEELSICKIIIIDTGIFLIKRESFVTIEPEVMWIIQESKLICFIKRRYQ*

Sequence

>CNT3058323
AGTATCTAAAAGGATGAAATTTAGATATTTGTACCCTATCGAAGTAAGGAACCATGGCATATATGTTTGGAACAGATTCCATTTTGAGATATTTGAAAAA
CGTTGAAAGCATCTGTCATTTCTCAACGCATTTATTTAGACAAAGATTCCATTTTTTCCTCTTTCCAGATGGTAAATATTTCTCAAAACATGGAGTGTGA
ATCAAACCCATGTTTGAACTGAAACTGAGATACTGATGCAAGTTCTTCCCTTCGGATTCAGATCGATTCGGATCTGAAAGAAGCTGACAATAAGTTCTTT
CAAAATTGACTCTTTGTTCCTCTGTCAGAGAGGTGTTCCAGAAATGTTTGCGATCGAGTAAATAGCTCTACGAACGAATGGATCGGATCGAGTTGGAAAA
TGGAAAAATTTGTACAAGTTATATGTTTCGTCACCACTTTGTGGAAAATCGTTAGGTATGAATATGTCATATACCTGTGACTCAATTGGCGAAGGTGAAA
TAGCATCTCTCTCCAAAAAAACATGTTTTTTTTACCAAAGAAAATATCTTGTTGCTAATGAACGAGATATAGAGGAATTGTCCATATGTAAGATCATAAT
TATTGATACGGGTATTTTTCTCATAAAAAGGGAATCTTTTGTTACAATAGAACCAGAAGTGATGTGGATTATTCAAGAATCGAAGTTGATTTGCTTTATA
AAAAGAAGATATCAATGAACTCCTATGAAAGGGTTTCAAGGGATTCAGCCAATTATCTCGATCGTGGGATATCATTGAGAAATAGGAATCTGTGTTTTCA
AAGGATTTCCGTTGATTATTCCTAGTATGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACCAAAATCGTGCTATTGTTCCTCCATTGATCATGA
ATTTCGATCTTTGGGAAGTATCATGATCATCTAATAAGAAAGGTTT