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Detailed information on CNT3058322


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70Y17|PSBA_AMBTC, E-value = 3e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378692Amborella trichopodaArabidopsis thaliana38.9525.5687.67365forward
CNT30606924Amborella trichopodaGossypium raimondii35.2240.3487.27330forward
CNT3068455Amborella trichopodaLeersia perrieri16.8648.7789.87158forward
CNT30117690Amborella trichopodaOryza nivara23.1667.690.32217forward

Expression of CNT3058322

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MYRRFSVLVIHLQKRPHKLVLSRLSKIAIMARSWFIQSSRTPKHTDYLEINNLRLVIQQYNMTYMPVSTNIEDRLILQDIYL*

Sequence

>CNT3058322
CCATGCATAGCACTGAATAGGGAGCCGCCTAATACACCCAGTACGCCTAACATGTGAAATGGTTGCATAAGGATGTTGTGCTCCGCCTGGAATATAATCA
TCAAGTCAAGAATACCATATATTCTTAGAGGCATACCATCTGAGAAACTTCCATGATCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCAGCAACAGG
AGCTGAATATGCAACAACAATCCAAGGGTGCTTACCCAGACGGAAACTAAGTTCCCATTAACAACCCATGTAACAAGCTACACTAAGTAAGAAGTGTAGG
ACAATTAACTCATAAGGACCACCGTCGTATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGTAGAGGTTGGAA
TAATTGCACCAGAAAGAATATTGCTTCCATAAAATAGAGAACTAGAAACAGGTTCATGGATCCCATCAATATCTACTGGAGGAGCCTTAATGAAGGCGAT
AATAAATACAGAAGTTGAAATAATGGCACCAGAAAGAATATTGTTTCCATAAAATAGAGAACCAGAAACAGGTTCACGGATCCCATCAATATCTACTAGA
GGAGCCGCAATGAAGGTGATAATAAATACATAAGTTGTGGTCAATAAGGTAGGGATCATCAAAACACCGAACCACCCAATGTATAGACGATTTTCGGTGC
TAGTTATCCACTTGCAGAAGCGCCCCCATAAGCTTGTGCTTTCGCGTCTCTCTAAAATTGCAATCATGGCAAGATCTTGGTTTATTCAATCATCAAGGAC
TCCCAAGCACACAGATTATCTAGAAATAAATAATTTAAGGCTTGTTATTCAACAGTATAACATGACCTATATGCCTGTGTCAACCAATATCGAAGATAGA
CTAATATTGCAAGATATCTATCTCTAGCTGGTCTATA