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Detailed information on CNT3058321


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70Y17|PSBA_AMBTC, E-value = 9e-126

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021444Amborella trichopodaCitrullus lanatus14.1626.6290.09111reverse complement
CNT30145403Amborella trichopodaMedicago truncatula32.494.4293.31254forward

Expression of CNT3058321

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MHNFHTKVSTVDYISPSVDDTTLTVNYRLVEIETI*

>peptide 2 (42 aa)
MSSYNIIGFLLLTESVTCISRLIFNDFPDQTRGYQGTMHITE*

>peptide 3 (29 aa)
SFNNSYTLRTKSCPFVDGASTTAKSRGKL*

>peptide 4 (30 aa)
MISLIKLEVIKEPCISLNREPPNTLATPNM*

Sequence

>CNT3058321
GTTCCTTCAACAACTCGTATACACTAAGAACGAAGTCTTGTCCATTTGTAGATGGAGCTTCAACAACAGCTAAGTCTAGAGGGAAATTGTGAGCATTACG
TTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATTATATCAGCCCAAGTGTTGATGACACGACCTTGACTGTCAACTACAGATTGGTCGAAATTG
AAACAATTTAGGTTGAAAGCCATAGTGCTAATACCCCAAGCAGTAAACCAAATACCTATTACGGGCCAAGCAGCTAGGAAGAGATGTACGGAACGAGAAT
TGTTGAAAGCCATAGTGCTAATACCCCAAGCAGTAAACCAAATACCTACTACGGGCCAAGCAGCTAGGAAGAAATGTAAGGAACGAGAATTGTTGAAACT
AGCATATTGGAAGAACAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTACTCTTGACCGAATCTGTAACCTGCATTAGCAGACTCA
TTTTCAATGATTTCCCTGATCAAACTAGAGGTTATCAAGGAACCATGCATATCACTGAATAGGGAGCCGCCGAATACACTAGCTACGCCTAACATGTGAA
ATGGGTGCATAAGGATGTTGTGCTTCGCCTGGAATACAATCGTCAAGTTGAAAATACCATATATTCCTAGAGGCATACCATCTGAGAAACTTCCTTGACC
AATAGGGTTGATTAAGAAAACAGTAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGATA