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Detailed information on CNT3058320


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70Y17|PSBA_AMBTC, E-value = 2e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Amborella trichopodaOryza sativa92.6650.9589.44644forward
CNT30378681Amborella trichopodaArabidopsis thaliana93.9667.8190.66653forward
CNT30196112Amborella trichopodaPisum sativum59.7189.6390.12415forward
CNT30300480Amborella trichopodaTriticum aestivum92.8149.2489.77645forward
CNT30391503Amborella trichopodaTriticum turgidum50.7970.689.52353forward
CNT3089384Amborella trichopodaVigna radiata73.2462.6889509forward
CNT30540528Amborella trichopodaBrassica napus93.9654.3791.27653forward
CNT30555706Amborella trichopodaOryza glaberrima75.9777.0889.2528forward
CNT30598581Amborella trichopodaFraxinus excelsior47.3493.283.59329forward
CNT30605440Amborella trichopodaGossypium raimondii52.8189.7390.19367forward
CNT30626343Amborella trichopodaDaucus carota43.8874.9490.49305forward
CNT30685372Amborella trichopodaTriticum urartu59.5745.1589.86414forward
CNT30360185Amborella trichopodaLactuca sativa95.1192.1988.35661forward
CNT30102095Amborella trichopodaOryza rufipogon19.8658.9788.41138forward

Expression of CNT3058320

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSSYNIIGFLLLTESVTCISRLIFNDFPDQTRGYQGTMHITE*

>peptide 2 (30 aa)
MISLIKLEVIKEPCISLNREPPNTLATPNM*

>peptide 3 (29 aa)
SFNNSYTLRTKSCPFVDGASTTAKSRGKL*

Sequence

>CNT3058320
GTTCCTTCAACAACTCGTATACACTAAGAACGAAGTCTTGTCCATTTGTAGATGGAGCTTCAACAACAGCTAAGTCTAGAGGGAAATTGTGAGCATTACG
TTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATTATATCAGCCCAAGTTGCTGATGACACGACCTTGACTGTCAACTACGGATTGGTTGAAATT
GAAACAATTTAGGTTGAAAGCCATAGTGCTAATACCCCAAGCAGTAAACCAAATACCTACTACGGGCCAAGCAGCTAGGAAGAAATGTAAGGAACGAGAA
TTGTTGAAACTAGCATATTGGAAGAACAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTACTCTTGACCGAATCTGTAACCTGCAT
TAGCAGACTCATTTTCAATGATTTCCCTGATCAAACTAGAGGTTATCAAGGAACCATGCATATCACTGAATAGGGAGCCGCCGAATACACTAGCTACGCC
TAACATGTGAAATGGGTGCATAAGGATGTTGTGCTTCGCCTGGAATACAATCGTCAAGTTGAAAATACCATATATTCCTAGAGGCATACCATCTGAGAAA
CTTCCTTGACCAATAGGGTTGATTAAGAAAACAGTAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGATA