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Detailed information on CNT30583181


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000319, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639810Echinochloa crusgalliNymphaea colorata95.0944.8393.542229reverse complement
CNT30531232Echinochloa crusgalliEucalyptus grandis96.266.5893.752255forward
CNT30318007Echinochloa crusgalliCorylus avellana90.1960.4993.762114reverse complement
CNT30550163Echinochloa crusgalliIpomoea triloba70.9982.3494.891664forward
CNT30519180Echinochloa crusgalliJuglans regia96.1668.1694.322254forward
CNT30619309Echinochloa crusgalliSesamum indicum75.7780.8492.451776reverse complement
CNT30283199Echinochloa crusgalliChenopodium quinoa96.1282.894.322253forward
CNT3021656Echinochloa crusgalliCitrullus lanatus95.7337.0794.562244forward
CNT30730441Echinochloa crusgalliCorchorus capsularis59.9100.2993.161404forward
CNT30195048Echinochloa crusgalliPisum sativum96.2559.9893.932256forward
CNT30508033Echinochloa crusgalliNicotiana attenuata96.0367.693.032251forward
CNT3047210Echinochloa crusgalliPrunus dulcis99.9172.891.842342forward
CNT30383013Echinochloa crusgalliTriticum turgidum99.7488.0995.852338forward
CNT30544747Echinochloa crusgalliBrassica napus79.2272.5191.981857reverse complement
CNT30311297Echinochloa crusgalliCamelina sativa69.9281.3891.71639forward
CNT3060563Echinochloa crusgalliArabidopsis lyrata78.5484.0393.71841reverse complement
CNT3083255Echinochloa crusgalliBrassica juncea95.6984.1793.272243reverse complement
CNT30265711Echinochloa crusgalliBrassica rapa89.3381.7391.982094forward
CNT30445720Echinochloa crusgalliSaccharum spontaneum69.8476.9698.531637reverse complement
CNT30433917Echinochloa crusgalliPapaver somniferum100.2686.2192.982350forward
CNT3023562Echinochloa crusgalliPopulus trichocarpa78.5482.4894.461841reverse complement
CNT3037170Echinochloa crusgalliCucumis melo95.6947.4894.22243forward
CNT30496898Echinochloa crusgalliDigitaria exilis58.6275.9594.471374forward
CNT30558388Echinochloa crusgalliPanicum hallii50.6885.5396.461188forward
CNT30335982Echinochloa crusgalliCynara cardunculus96.7269.0787.62267reverse complement

Expression of CNT30583181

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MEQCRQGKSAKRIRNFGKRIGSEGWARGSRPRTRRLPVDCSSCSRGERGPPRAGRGTDRERFFRGPSPGVEQPTQNWYGQGESDCLIKTKHCDGPCGC*

>peptide 2 (37 aa)
RSLTCVRVDGFLNPGCARKLTSGRPSRAAPLADPDLL*

>peptide 3 (36 aa)
MGKPILRDGVTPADSAISRVARKGIGLRFPEPGRGG*

>peptide 4 (60 aa)
MPRHLISDAHEWINEIPSVPVYYPAKPQPRERAWRNQRGKKTLLSLTLVRLCRNDLRGVG*

>peptide 5 (40 aa)
MNRKPGYGAELRANLEPTKGVGRLRQQDGGHGSRNPLRSV*

>peptide 6 (33 aa)
ESNMRASRRVLKPGMRKEADEREALTGRTAGRP*

>peptide 7 (34 aa)
MNGLTRFPVSLSTIQRNHSQGNGLGGISGERRPC*

>peptide 8 (32 aa)
MKIRRTEYRPRPVVLITASGLQGEQPLANGTM*

Sequence

>CNT30583181
AGGAGTCTAACATGCGTGCGAGTCGACGGGTTCTTAAACCCGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACC
CTGATCTTCTCTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGG
AGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATTGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTC
CCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCAGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAAT
AGGTAGGACGGCACGGCTGCTTCGGTGAGCCGTGCCATGGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCG
GAAGCCGGGTTACGGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCG
CTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTAAAGCGCGCGACCCACACCCGGCCATCTGGGCGAGCGCCAT
GCCCCGATGAGTAGGAGGGCGCGGCGGCCGCTGCAAAACCCGGGGCGCGAGCCTGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATAT
TCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGA
CAGCGCGATTTCGCGTGTTGCCCGAAAGGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGG
CGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCTGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGTCGGAAGAGCACCGCAC
GTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCATGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAG
GTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGTTGGGCTCGGG
GGTCCCGGCCCCGAACCCGTCGGCTGCCGGTGGACTGCTCGAGCTGCTCCCGTGGCGAAAGAGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGAACG
GTTCTTTCGGGGGCCTTCCCCGGGCGTCGAACAACCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGT
CCCTGCGGATGCTAACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGAC
TCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCAGTGTCCCTGTCTACTATCCAGCGAAACCACA
GCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTAGAAATGACCTGAGAGGTGTAGGATAA
GTGGGAGCCTCCGGGCGCAAGTGAAATACCACTACTTTTAACATTATTTTACTTATTCCGTGGGTCGGAAGCGGGGCATTGCCCCTCTTTTTGGCTCCAA
GGCCTGGCTTTGCTGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGA
TGAGATCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTAT
CGATCCTTTAGATCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTT
TTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGAC
CGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGG