Detailed information on CNT30582932


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 4e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555034Echinochloa crusgalliOryza glaberrima65.5655.9888.14590forward

Expression of CNT30582932

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MVTRASPKRDDGTLTALPANAVEERAMVLVAIALQTPRCLVLYAGVSETR

>peptide 2 (55 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGSSARWRGCSARGSGSGCRGSQGRPR*

>peptide 3 (38 aa)
WKGKKKRRAGLDGIQYNQTMNTANPSPLNPRNLHHGTN*

>peptide 4 (31 aa)
VERKEKKTSWVGRDTIQSDNEHCKSFSVEPS*

>peptide 5 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 6 (37 aa)
MVQTETSARSHPNTLQHVSTSNSLGSTPHLPGTKLVA*

Sequence

>CNT30582932
GTGGAAAGGAAAGAAAAAAAGACGAGCTGGGTTGGACGGGATACAATACAATCAGACAATGAACACTGCAAATCCTTCTCCGTTGAACCCTCGTAATTTA
CACCATGGTACAAACTGAAACCAGTGCGCGCTCACATCCGAACACCCTACAGCACGTCAGCACATCGAACAGTTTGGGATCAACGCCTCACTTGCCGGGC
ACGAAGTTGGTGGCGTAGGCCCAGGCATTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCAAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGA
CGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCAGCGAAGGCCTCTGGGTCGTCGGCCAGATGGCGAGG
ATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCAAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACT
TGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAGCTCGCGGTTCTTGGCGAA
GGTCTCGGGGTCGGCGGACAGCCCGGCGGTGTCCCAGCCGTAGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCTGGGCCGTAC
CACGGGCTGCCGGAGGCGGCCGGCTTGGGCTTCGCCGCGGTCTTGCGCATGGTCACGCGGGCCTCGCCGAAGAGAGACGATGGCACGTTGACGGCCTTGC
CGGCGAACGCCGTGGAGGAGAGGGCCATGGTGCTGGTCGCCATTGCGCTGCAAACACCGAGGTGTCTTGTGCTCTATGCAGGGGTGAGTGAGACTCGCAG