Detailed information on CNT30582922


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 6e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30393237Echinochloa crusgalliTriticum turgidum60.4260.8394.46542forward
CNT30474080Echinochloa crusgalliSaccharum spontaneum69.4583.0795.02623forward
CNT30684772Echinochloa crusgalliTriticum urartu60.4260.3694.28542forward
CNT30721831Echinochloa crusgalliTriticum spelta40.6943.0994.52365forward
CNT30369182Echinochloa crusgalliOryza glumipatula44.8247.8691.29402forward
CNT30108136Echinochloa crusgalliOryza longistaminata37.7942.3292.63339forward

Expression of CNT30582922

Peptides detected in this lncRNA

>peptide 1 (52 aa)
SGLCTHTVAQANRRWKGKKKRRAGLDGIQYNQTMNTANPSPLNPRNLHHGTN*

>peptide 2 (49 aa)
MVTRASPKRDDGTLTALPANAVEERAMVLVAIALQTPRCLVLYAGVSETR

>peptide 3 (37 aa)
MVQTETSARSHPNTLQHVSTSNSLGSTPHLPGTKLVA*

>peptide 4 (45 aa)
LWVVHAHGCSSKSTVERKEKKTSWVGRDTIQSDNEHCKSFSVEPS*

>peptide 5 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 6 (33 aa)
LGCARTRLLKQIDGGKERKKDELGWTGYNTIRQ*

Sequence

>CNT30582922
CTCTGGGTTGTGCACGCACACGGTTGCTCAAGCAAATCGACGGTGGAAAGGAAAGAAAAAAAGACGAGCTGGGTTGGACGGGATACAATACAATCAGACA
ATGAACACTGCAAATCCTTCTCCGTTGAACCCTCGTAATTTACACCATGGTACAAACTGAAACCAGTGCGCGCTCACATCCGAACACCCTACAGCACGTC
AGCACATCGAACAGTTTGGGATCAACGCCTCACTTGCCGGGCACGAAGTTGGTGGCGTAGGCCCAGGCATTGTTGTTGACGGGGTCGGCGAGGTGGTCGG
CAAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGG
GTTGCCGAGGTAGTCAAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCG
GGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCCGG
CGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCTGGGCCGTACCA
CGGGCTGCCGGAGGCGGCCGGCTTGGGCTTCGCCGCGGTCTTGCGCATGGTCACGCGGGCCTCGCCGAAGAGAGACGATGGCACGTTGACGGCCTTGCCG
GCGAACGCCGTGGAGGAGAGGGCCATGGTGCTGGTCGCCATTGCGCTGCAAACACCGAGGTGTCTTGTGCTCTATGCAGGGGTGAGTGAGACTCGCA