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Detailed information on CNT30582819


BLAST search results

BLAST vs Swiss-Prot:
sp|O65101|PSAH_MAIZE, E-value = 4e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693708Echinochloa crusgalliOryza sativa15.8124.0989.39132forward
CNT30672419Echinochloa crusgalliSetaria viridis16.4135.2297.08137forward
CNT30521057Echinochloa crusgalliSetaria italica16.4126.1597.08137forward
CNT30178523Echinochloa crusgalliSecale cereale29.2243.4980.74244forward
CNT30435366Echinochloa crusgalliAegilops tauschii10.92089.0191forward
CNT30240221Echinochloa crusgalliAvena sativa29.5872.0183.81247forward
CNT30655703Echinochloa crusgalliTriticum dicoccoides10.925.3589.0191forward
CNT30131217Echinochloa crusgalliLolium perenne29.4649.382.52246forward
CNT30679604Echinochloa crusgalliTriticum urartu10.927.0889.0191forward
CNT30720193Echinochloa crusgalliTriticum spelta16.1724.7382.96135forward
CNT30338869Echinochloa crusgalliEragrostis tef13.2928.192.79111forward
CNT30704201Echinochloa crusgalliPrunus avium10.0632.4383.3384forward
CNT30149479Echinochloa crusgalliBrachypodium distachyon11.0223.989.1392forward
CNT30101676Echinochloa crusgalliOryza rufipogon15.8131.1390.15132forward
CNT30496965Echinochloa crusgalliDigitaria exilis11.1427.3598.9293forward

Expression of CNT30582819

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MELPARPATGCTETAAKEAMASVGVRADGVARLLPGVLQRVRAQT*

>peptide 2 (36 aa)
MYSAGCTRHATPFQLYARVQYEQHIINRQRSNISTA*

>peptide 3 (71 aa)
MVSGASSTSKLDKWGRKFGLDLAARARLRRLLRPLLDRQEVRRRRRAHVGQQGAAAQQQELEQQGEGASEP*

Sequence

>CNT30582819
TGATGGAAGCCAAATTTTTATATCTTTTTATTTGCGGGTAAAACTTTTATATCCTTTTACAGAGGAGTGGATGTATTGATGCATATTTACCTTAACTACT
GTAATAGATTCATTTATACTATGCGATCTTCTTGTCGATAACAACGTCGATATAAAAACATGTATTCTGCAGGTTGTACGAGGCACGCAACGCCATTTCA
ATTGTATGCCAGAGTACAATATGAACAACATATCATAAACAGGCAGAGATCGAATATATCAACAGCATAACAGGCAGGGATACATGGTATCCGGAGCTAG
CAGTACAAGCAAGCTAGACAAGTGGGGCAGGAAATTTGGCTTAGATCTTGCCGCGCGGGCCCGGCTGCGGCGGCTGCTGCGGCCCCTTCTTGATCGGCAG
GAGGTCCGGCGACGCCGACGCGCTCACGTAGGCCAGCAGGGAGCCGCCGCCCAGCAGCAGGAACTTGAGCAGCAGGGGGAGGGCGCGTCGGAGCCGTAGA
GGTCCCACTGCCCAGTGGTGTTGCCGATGTCCTCGAGGTCGAAGTAGACGCTCTTGTCGCCGTACTTGGCCACCACGGCGGCGGAGCGGGGCCTGCGGAC
GGAGCGGCAGGCGGCGCGGGACGACGGCCTGACGGCGAGCTTCCTGCCGGAGATGGAGCTGCCGGCGAGGCCGGCGACCGGCTGCACGGAGACGGCGGCG
AAGGAGGCCATGGCGTCGGTTGGCGTGCGCGCTGACGGTGTGGCGAGGTTACTACCGGGAGTGTTGCAGCGCGTACGTGCACAAACTTAATTCGGGGGAT
CCTGCTAAAGTTTGTGACTTGTGTGGGAGTGGGTG