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Detailed information on CNT30582755


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 5e-140

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186674Echinochloa crusgalliSecale cereale47.5455.8992.72522forward
CNT30298796Echinochloa crusgalliTriticum aestivum47.5454.8393.87522forward
CNT30393694Echinochloa crusgalliTriticum turgidum47.1853.5194.02518forward
CNT30684601Echinochloa crusgalliTriticum urartu49.7356.8293.77546forward
CNT30345513Echinochloa crusgalliEragrostis tef47.5456.2593.3522forward
CNT30149365Echinochloa crusgalliBrachypodium distachyon46.0879.9489.33506forward

Expression of CNT30582755

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MVTRASPKRDDGTLTALPANAVEERAMVLVAIALQTPRCLVLYAGVSETR

>peptide 2 (37 aa)
MVQTETSARSHPNTLQHVSTSNSLGSTPHLPGTKLVA*

>peptide 3 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 4 (96 aa)
VALCPLSKRKTLQISGCLCLVSTLQHNKSHREQNHWLFRIYRPGSGLCTHTVAQANRRWKGKKKRRAGLDGIQYNQTMNTANPSPLNPRNLHHGTN*

>peptide 5 (77 aa)
SPFVHSRSGKHCKFQGAFVWLAHSSTTNPIASKITGSSGFTDQALGCARTRLLKQIDGGKERKKDELGWTGYNTIRQ*

Sequence

>CNT30582755
CGTCGCCCTTTGTCCACTCTCGAAGCGGAAAACACTGCAAATTTCAGGGTGCCTTTGTCTGGTTAGCACACTCCAGCACAACAAATCCCATCGCGAGCAA
AATCACTGGCTCTTCAGGATTTACCGACCAGGCTCTGGGTTGTGCACGCACACGGTTGCTCAAGCAAATCGACGGTGGAAAGGAAAGAAAAAAAGACGAG
CTGGGTTGGACGGGATACAATACAATCAGACAATGAACACTGCAAATCCTTCTCCGTTGAACCCTCGTAATTTACACCATGGTACAAACTGAAACCAGTG
CGCGCTCACATCCGAACACCCTACAGCACGTCAGCACATCGAACAGTTTGGGATCAACGCCTCACTTGCCGGGCACGAAGTTGGTGGCGTAGGCGGCCGT
TCTTGAGCTCCTTGACCTTGAGCTCAGCGAAGGCCTCTGGGTCGTCGGCCAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTC
GCCGAGCGGGCCGCCGGCAATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTC
GGGTTGCCGAGGTAGTCAAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCT
CGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCC
GGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCTGGGCCGTAC
CACGGGCTGCCGGAGGCGGCCGGCTTGGGCTTCGCCGCGGTCTTGCGCATGGTCACGCGGGCCTCGCCGAAGAGAGACGATGGCACGTTGACGGCCTTGC
CGGCGAACGCCGTGGAGGAGAGGGCCATGGTGCTGGTCGCCATTGCGCTGCAAACACCGAGGTGTCTTGTGCTCTATGCAGGGGTGAGTGAGACTCGC