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Detailed information on CNT30582730


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 4e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696274Echinochloa crusgalliOryza sativa38.7662.8588.6614forward
CNT30554984Echinochloa crusgalliOryza glaberrima38.7654.6388.76614forward
CNT30251666Echinochloa crusgalliAvena sativa38.3259.5192.92607forward
CNT30471514Echinochloa crusgalliSaccharum spontaneum43.7582.493.65693forward
CNT3011490Echinochloa crusgalliZea mays43.6977.2391.62692forward
CNT30596906Echinochloa crusgalliOryza meridionalis36.4959.0489.79578forward

Expression of CNT30582730

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGSSARWRGCSARGSGSGCRGSQGRPR*

>peptide 2 (49 aa)
MVTRASPKRDDGTLTALPANAVEERAMVLVAIALQTPRCLVLYAGVSETR

>peptide 3 (37 aa)
MVQTETSARSHPNTLQHVSTSNSLGSTPHLPGTKLVA*

>peptide 4 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30582730
TATTAGTAGAATGGGTTGCACAGGCCACGGAAACAAAAAATCTAGAATTATAAAGGGGCTAGAGGTAGGTTAGCTCCCGCGTTATTTGAACGTTTAGGGG
CTAGGTTCTCAAAAATTTAGAATTATGTAACCACAATATTGACGTCCTGAAAAGTTCAAGTGTTCAACATAGTTCTACGGTGTTAGCGCCACGACTTCCA
TCAGGTAATAAGCAGATGTCTGAAGTGTAATTCAGCATACAGGAAACGTACGGCAACGGAGCAGATAAATATCCTTTTCGAGTTTTCGTATCCCCTAGTA
TGATCTGTGGATTAACCAACACTGTGATGCAGTAATCTCTCCGTTGCTGCATCTAGCATAGCATCTAGAACTCTCCTCCGTCAGTCCCAAATTATTGTAG
GCTAATGGAGTAGGAATTCTTGATCATCTAAACATCCTAACATATATTCCATTAGCCTCGCTCTCCACAACCAAACGGCGTCAGCTTCGTCGCCCTTTGT
CCACTCTCGAAGCGGAAAACACTGCAAATTTCAGGGTGCCTTTGTCTGGTTAGCACACTCCAGCACAACAAATCCCATCGCGAGCAAAATCACTGGCTCT
TCAGGATTTACCGACCAGGCTCTGGGTTGTGCACGCACACGGTTGCTCAAGCAAATCGACGGTGGAAAGGAAAGAAAAAAAGACGAGCTGGGTTGGACGG
GATACAATACAATCAGACAATGAACACTGCAAATCCTTCTCCGTTGAACCCTCGTAATTTACACCATGGTACAAACTGAAACCAGTGCGCGCTCACATCC
GAACACCCTACAGCACGTCAGCACATCGAACAGTTTGGGATCAACGCCTCACTTGCCGGGCACGAAGTTGGTGGCGTAGGCCCAGGCATTGTTGTTGACG
GGGTCGGCGAGGTGGTCGGCAAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGT
TCTTGAGCTCCTTGACCTTGAGCTCAGCGAAGGCCTCTGGGTCGTCGGCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAG
TCAAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGC
CGAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCCGGCGGTGTCCCAGCC
GTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCTGGGCCGTACCACGGGCTGCCGGAG
GCGGCCGGCTTGGGCTTCGCCGCGGTCTTGCGCATGGTCACGCGGGCCTCGCCGAAGAGAGACGATGGCACGTTGACGGCCTTGCCGGCGAACGCCGTGG
AGGAGAGGGCCATGGTGCTGGTCGCCATTGCGCTGCAAACACCGAGGTGTCTTGTGCTCTATGCAGGGGTGAGTGAGACTCGCA