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Detailed information on CNT30582708


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30222490Echinochloa crusgalliHordeum vulgare18.8927.4590.7129forward

Expression of CNT30582708

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MGAYAVAISTSSVSHTHRRALLPSCKMVVRCLLVTAKLMFVILQGSVL*

>peptide 2 (94 aa)
MTMCRESTLIYTRAHCSINNHMDHRLLEEVGEATPYMVRQTLRMVTSPAAPRAPAWPCTAVFRSGPVRAKGPTRRYPCARPTSMPRSSGLTAVR*

Sequence

>CNT30582708
GCCCAGGAATGAATGAAGAGTCTACATTACCACACTAGTTAATTAATTGTTTTTGTCCCCAAAGTAGATTAACTCCATCCAAGTAAGGAATTAACAGTTC
CAAAAGTTACAGCCCCATCCAGCCATCCATGACCATGTGCAGAGAAAGTACATTAATTTATACACGTGCTCACTGCTCAATCAACAACCACATGGATCAT
CGTCTACTTGAAGAAGTAGGGGAGGCGACGCCGTACATGGTGAGGCAGACGCTGAGGATGGTGACGAGCCCGGCGGCGCCCAGGGCGCCGGCCTGGCCGT
GCACGGCCGTGTTCCGGAGCGGGCCGGTGAGGGCGAAGGGCCCGACGAGGAGGTACCCGTGCGCGAGGCCCACCTCGATGCCGCGGAGCAGCGGGCTCAC
GGCGGTGCGGTAGGCCGGCAGGTTGGAGAGGTACCAGGCGACGAGAGGGCTGGAGGTGACGGGCGCCCCGAGGCCTGGAGTGCACCAAGCTGCTCTTCAT
CACCTGGCTCGCCATGGGAGCGTACGCCGTTGCCATCTCGACCTCTTCTGTCTCTCACACACACAGAAGAGCTCTTCTTCCTTCCTGCAAAATGGTAGTA
AGATGTCTGCTTGTGACGGCCAAATTAATGTTTGTGATCCTGCAGGGGAGTGTGTTGTGAGAAAATCCGTGGATGGATGGGGC