Detailed information on CNT30582663


BLAST search results

BLAST vs Swiss-Prot:
sp|O65101|PSAH_MAIZE, E-value = 3e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521234Echinochloa crusgalliSetaria italica29.5611.290.1281forward
CNT30656050Echinochloa crusgalliTriticum dicoccoides24.4510.9188.0667forward
CNT30130278Echinochloa crusgalliLolium perenne24.457.6492.5467forward
CNT30678866Echinochloa crusgalliTriticum urartu24.4510.7288.0667forward

Expression of CNT30582663

Peptides detected in this lncRNA

>peptide 1 (77 aa)
RVVGGGRVGAVEVEVDALVAVLGHDGGGAGPADGAASGAGRRPDGELPAGDGAAGEAGDRLHGDGGEGGHGVGWRAR*

>peptide 2 (39 aa)
MELPARPATGCTETAAKEAMASVGARADGVPRLLPGVLQC

>peptide 3 (43 aa)
AGCRGRARRSRRGRSRRSCRRTWPRRRRSGACGRSGKRRGTTA*

Sequence

>CNT30582663
GCGGGTTGTAGGGGGAGGGCGCGTCGGAGCCGTAGAGGTCGAAGTAGACGCTCTTGTCGCCGTACTTGGCCACGACGGCGGCGGAGCGGGGCCTGCGGAC
GGAGCGGCAAGCGGCGCGGGACGACGGCCTGACGGCGAGCTTCCTGCCGGAGATGGAGCTGCCGGCGAGGCCGGCGACCGGCTGCACGGAGACGGCGGCG
AAGGAGGCCATGGCGTCGGTTGGCGCGCGCGCTGATGGTGTGCCGAGGTTACTGCCGGGAGTGTTGCAGTGCGT