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Detailed information on CNT30582636


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071898Echinochloa crusgalliQuercus suber28.8137.5384.29140forward
CNT30224824Echinochloa crusgalliHordeum vulgare33.9529.9586.06165forward
CNT3068273Echinochloa crusgalliLeersia perrieri41.3626.5990.05201forward
CNT30105029Echinochloa crusgalliOryza longistaminata48.9751.6389.08238forward
CNT30104659Echinochloa crusgalliOryza rufipogon44.0344.2189.25214forward
CNT30578572Echinochloa crusgalliOryza barthii40.5342.0989.85197forward
CNT30496955Echinochloa crusgalliDigitaria exilis65.8471.1189.06320forward
CNT30118011Echinochloa crusgalliOryza nivara25.3131.0694.31123forward
CNT30593120Echinochloa crusgalliEragrostis curvula54.9494.3589.14267forward
CNT30604793Echinochloa crusgalliOryza punctata35.1936.9390.64171forward

Expression of CNT30582636

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MVAACASTCPPAGFLGSVMNIPPPGSAIT

>peptide 2 (35 aa)
MLKIEQRNTTVTFLDVQYLANFTKEAWSILGQEAL*

Sequence

>CNT30582636
TGGTCTCTGCCTAGTTTTTGGGAAGCAAAGAATGCAGTAGTATAGTAAATTTATATAAGAAAACATATCTTCTCAGTACAATTGGTTTGATCTCACCTCC
ATGCAAAAAATACCTAATAGGAGGCCTAAGCATCATAGACTTTACCTACTTTTTCCATGTTAAAGATAGAACAGAGAAACACTACTGTAACTTTTCTCGA
TGTACAGTATCTTGCAAATTTTACTAAAGAAGCCTGGTCAATCTTAGGACAGGAAGCACTCTGAGCGGATAATCAGTCTTTTGCATCCATTATTCCACCT
GATGTGACCTGGAAAACGTCTTCTCCCTCAGGAAGGTTAGGGGCATCAAAGATCTTGCAGACACGTTGTTCGCCTTTGCCTTTCCTCAGCATCAATCTGA
TGGTGGCAGCGTGCGCCAGCACATGCCCGCCTGCTGGTTTCTTGGGATCGGTTATGAACATACCACCACCTGGATCAGCAATCACT